Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq38 145 9e-30 >seq38 Length=305773 Score = 145 bits (160), Expect = 9e-30 Identities = 187/258 (72%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 139262 TCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGC 139321 ||| | || ||||||||| | ||||| | ||||| ||| || || | ||||||| ||| Sbjct 130741 TCCTTATGGACCATGATAGACAGCATACATTCCAGCCATGTTAGCTAAAAGTGCTTATGC 130800 Query 139322 TGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGC 139381 || || || || |||||| || |||||||| ||||| || ||||||||||| |||| Sbjct 130801 CGTACAAATATTTGAGGTTGCCTTTTCTCTTCTGATATGTTGTTCTCTAGTTTGAAGTGA 130860 Query 139382 TAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTAT 139441 | ||| || ||||| || |||| || ||| ||| | ||| | || || || Sbjct 130861 CATTCTATAAGCAGGTTTACCTTGAGCATCTTTTGAAATACCGATAATACGTCCTGGCAT 130920 Query 139442 CTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCAT 139501 ||||| ||||| ||| | ||||||||| ||||||||||| ||||| | ||||| Sbjct 130921 TTTTCTTTTATAGGCATCTTCTACTGCAAAGAAGGCAGCATGAGGTCCTCCAAAACCCAT 130980 Query 139502 AGGAATACCAAACCTTTG 139519 ||||| ||||| ||||| Sbjct 130981 AGGAACTCCAAATCTTTG 130998 Score = 114 bits (126), Expect = 1e-20 Identities = 204/294 (69%), Gaps = 13/294 (4%) Strand=Plus/Plus Query 139792 TTTGTGGGAATATATCTTGATCAACTATTACAGTCTTCTTATCTCTTGTAGAATTAT-AT 139850 ||||| |||| | || |||||| || | | ||||||| || | | | ||| | Sbjct 131271 TTTGTTGGAAGACATGTTGATCTACGAAAAACTTCTTCTTTTC----GAACCACTATTAA 131326 Query 139851 GCTAACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATT 139910 || | | |||||| || | || || || |||||||| |||| |||||| || | | Sbjct 131327 GCCATGAACATTGCTTCACCAGCAGCTGTGGCTTCATCCAATAAAGATGCATTAGAAACA 131386 Query 139911 GGTAATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCC 139970 | |||||| | |||||| | || |||| |||||||| || || |||||||| || Sbjct 131387 TCCATTCCTGTTAATTCTGTTACGACAGTTTAGTAATTGAGCAATGCCTCCAATCTACCT 131446 Query 139971 TGAGATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACG 140030 | ||||||||||||| || ||||| || ||||||||||| | ||| | || | ||| Sbjct 131447 TATGATATCTCAGCTTAGTAAGGAGTATAGGATGTGTACCATCCAGGGTCTTCTAAAACA 131506 Query 140031 TTTCGCTGTATGAC---TGG-GGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 ||||| |||| || ||| | |||| || |||||| | ||||| || || Sbjct 131507 TTTCGGAGTATCACGTATGGAGTGTGT----GTACCATAGAAACCTTGTCCAAT 131556 Score = 105 bits (116), Expect = 8e-18 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 ||| |||| ||||||| || ||||| ||||| |||||||| || ||||| |||||| Sbjct 129658 ACAGCAATTGGACCTAAACCTGGACCACCACCACCATGTGGGATGGCAAATGTTTTATGT 129717 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCA 138302 ||||| | || || ||||| ||||| | | || |||| | | || || | ||| Sbjct 129718 AAATTCAAGTGGCAAACATCAGCACCTAAATAACCTGGTGAAGTAAATCCAACTTAAGCA 129777 Query 138303 TTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATCTTACATATC 138362 || | ||| |||||||| | ||| || ||||||| ||||| | | | || Sbjct 129778 TTCATATTGGCACCATCCATATACACTAATCCACCATGTAAATGAATTAATTCAATGATT 129837 Query 138363 TGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCATAATACA 138418 | | || | | |||| | ||||||| ||| ||||||||||| ||||||||||| Sbjct 129838 TTTTTGGTTTAATCTTCATAAACACCATAAGTTGATGGATATGTGATCATAATACA 129893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578992776478040