Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq10 123 3e-23 seq56 107 2e-18 >seq10 Length=460275 Score = 123 bits (136), Expect = 3e-23 Identities = 296/439 (67%), Gaps = 13/439 (3%) Strand=Plus/Minus Query 64777 GAAAAGAAATTCATAAAGTACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTT 64836 |||||| | || || || || | |||| |||||||||| ||||||||||| | Sbjct 101624 GAAAAGCACTTTATTAAATATGTATTGGCTTTCTTTGCTGCCAGTGATGGAATTGTCAAT 101565 Query 64837 GAGAA--TATCAATAACAATTTTGCGGATGAAGTGCAGATAAGCGAAGCGCGCTCATTCT 64894 ||||| || || |||||||| || | ||||| || || ||||| | | |||| Sbjct 101564 GAGAACTTAGCA-TAACAATTCTGTACA-GAAGTTCAAATTCCAGAAGCCAGATGTTTCT 101507 Query 64895 ACGCATATCAA--TGCCATAATGAAATGGTTCATGGCGAAACATATTCAAAATTGATTGA 64952 | | || | || |||||| |||| | ||| ||||||||||| |||||||| Sbjct 101506 ATGGATTTTAAATTGCCATG--GAAAATATACATTCTGAAACATATTCTCTCTTGATTGA 101449 Query 64953 CAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACTGTACC 65012 | ||||| | |||| | |||||| || | ||| | | ||||| | | ||| || Sbjct 101448 TACTTACATCACTGATGAAAATGAAAAAAATTACTTACTCCATGCCATTGACAATGTGCC 101389 Query 65013 ATGTA-TTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCT 65071 |||| || | |||||||| |||||||||||||||| | | || | || | Sbjct 101388 -TGTAATTCAAAAGAAGGCATCATGGGCAATGAAATGGATCAATGATAATGAT---TCAT 101333 Query 65072 TCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCT 65131 | || || | || |||| || || ||| || || ||||||||||| || || || | Sbjct 101332 TTGCTGAAAGACTAATTGCTTTCGCTGCTGTTGAAGGCATCTTCTTCTCTGGTTCTTTTT 101273 Query 65132 GCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAAC 65191 | || |||| |||| | || ||| | || |||||||| ||| ||||| |||||| Sbjct 101272 GTGCCATTTTTTGGATCAAAAAGAGATCACTTATGCCAGGACTAACATTCTCCAATGAAT 101213 Query 65192 TTATTTCCCGAGATGAGGG 65210 | || || ||||||| || Sbjct 101212 TGATATCAAGAGATGAAGG 101194 >seq56 Length=254943 Score = 107 bits (118), Expect = 2e-18 Identities = 236/348 (68%), Gaps = 17/348 (5%) Strand=Plus/Plus Query 75908 ACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAAT 75967 |||||| || |||||| | ||||| ||||| ||||| | || ||||| ||||||||| Sbjct 216792 ACTGGATTGCCTTATATGTTATACAAAGATGCATGTAATTAAAAAAGTAATCAAAAGAAT 216851 Query 75968 TTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGAT 76027 || |||||||| || || ||| | || || |||||| | | || ||| | ||| Sbjct 216852 TTAGGAACAATTAAAAGTAGTAATTTATGTACTGAAATTATTCAATATACATCTCCTGAT 216911 Query 76028 GAGACGGCTGTTTGCAATTTGGC----ATCAATCGCCCTTCCAAAGTATGTCAATGAAGA 76083 |||| ||||| |||||||| || || ||| | ||||| ||||||| ||| Sbjct 216912 GAGATAGCTGTATGCAATTTAGCTAGTATAAAT----TTGTAAAAGTTTGTCAATCCAGA 216967 Query 76084 GACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCT 76143 | | |||||||||| || ||| | ||||| || || || | || | ||||| Sbjct 216968 ---TAGAACTTTTGATTTTGTTAAATTATTGGAAATTACTAAAATAATCACAACTAATCT 217024 Query 76144 AAACCGAGTCATTGACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGT---CTAATAT 76200 || ||| || || ||||||||||| | ||| | | || | ||| |||| Sbjct 217025 GAATTTAGTTATAGATCTTAATTTTTATCCTG-TGA-AATAAGC-AGAGTACAGCAATAA 217081 Query 76201 GCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATT 76248 ||| ||||| ||||| ||||||||| |||| | || |||| ||| Sbjct 217082 AAAACATAGACCAATTGGATTGGGTGTTTAAGGATTTGCTGATGCATT 217129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596563805817760