Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2 141 2e-28 seq6 118 2e-21 seq753 109 1e-18 seq751 89.7 9e-13 >seq2 Length=701642 Score = 141 bits (156), Expect = 2e-28 Identities = 190/262 (73%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| || |||||||| | || | ||| | || | ||| | ||||| |||||| Sbjct 528637 ATTTACATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTG 528578 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| ||| ||||||| ||||||||| || || | ||| | || | Sbjct 528577 TAGTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAA 528518 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | ||| || || || Sbjct 528517 TCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGAT 528458 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT-TTT 193363 | ||||| || ||||| || ||||| ||||||| || ||||| || |||||||| ||| Sbjct 528457 GGTTCAACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATTT 528398 Query 193364 ATTAGTAAAATAATTATTTTAA 193385 ||| ||| |||||| || || Sbjct 528397 ATT--TAATTTAATTAATTAAA 528378 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 ||||| || |||||||| | || | ||| | || | ||| | ||||| |||||| Sbjct 527687 ATTTACATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTG 527628 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || | ||||| || ||||||| |||||| || ||||| | ||| | || | Sbjct 527627 TAGTCTGAGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAA 527568 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || ||||||||||||||||| ||||| | ||| | ||| || || || Sbjct 527567 TCGGGTGGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGAT 527508 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | ||||| || ||||| || ||||| ||||| | || ||||| || |||| ||| Sbjct 527507 GGTTCAACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTTACGAAAATTTACAT 527452 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 |||||||| | || | |||| ||| | ||| | ||||| |||||| ||||| || Sbjct 527906 CCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAG 527847 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| ||| ||||||| ||||||||| || || | ||| | || ||| || || Sbjct 527846 AGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGG 527787 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 ||||||||||| |||| ||||| | ||| | | ||| || || || | ||||| Sbjct 527786 ATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACA 527727 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| ||||| | || || || || |||| |||| Sbjct 527726 TCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Score = 98.7 bits (108), Expect = 2e-15 Identities = 168/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Minus Query 193123 TAATTTATA---TACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAA 193179 |||||||| | |||||||| | || | ||| | || | ||| | ||||| || Sbjct 528869 TAATTTATCAGTTTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAA 528810 Query 193180 TATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCT 193239 |||| ||||| || | ||||| ||| ||||||| ||||||||| || || | ||| | Sbjct 528809 TATTGTAGTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTT 528750 Query 193240 GTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTAT 193299 || ||| || || ||||||||||| |||| ||||| | ||| | | ||| || | Sbjct 528749 ATTAATCGGGTGGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGT 528690 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 | || | | ||| || ||||| || || ||||| || | || || || || |||| || Sbjct 528689 CTGATG-GTTAACGTCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACGAAGATTTACA 528631 Query 193360 TT 193361 || Sbjct 528630 TT 528629 >seq6 Length=529034 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| || | || | ||| | || || |||||| ||||| || Sbjct 10644 CCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 10703 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || ||||||| ||||| |||||||| | ||| | |||||| || || Sbjct 10704 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 10763 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || |||| ||||| | ||| | ||||||||| || | ||||| Sbjct 10764 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 10823 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| || || || || || || || |||| |||| Sbjct 10824 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 10871 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| || | || | ||| | || || |||||| ||||| || Sbjct 11626 CCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 11685 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || ||||||| ||||| |||||||| | ||| | |||||| || || Sbjct 11686 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 11745 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || |||| ||||| | ||| | ||||||||| || | ||||| Sbjct 11746 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 11805 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| || || || || || || || |||| |||| Sbjct 11806 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 11853 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| || | || | ||| | || || |||||| ||||| || Sbjct 14406 CCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 14465 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || ||||||| ||||| |||||||| | ||| | |||||| || || Sbjct 14466 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 14525 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || |||| ||||| | ||| | ||||||||| || | ||||| Sbjct 14526 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 14585 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || ||||| || || || || || || || |||| |||| Sbjct 14586 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 14633 Score = 113 bits (124), Expect = 8e-20 Identities = 169/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| || || || ||| ||||| ||| | | || | ||| | ||||||| |||||| Sbjct 9877 AATCTACATTCCTCCTTTCAATATAAGAAGTAAGTGAATTGTTGATTCTTTAGCAATATT 9936 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| | | ||||| | ||||||| ||||| |||||||| | ||| | ||| Sbjct 9937 ATAGTCAGGGAGTGTTCTTCCACTTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTG 9996 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||| || || |||||||| || | ||| ||||| | ||| | ||||||||| | Sbjct 9997 ATCGGGTGGGATTCCTTCCTTTTGTTGGATTTTAGCTTTAACTGAGTCAATAGTATCTGT 10056 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 | |||| || ||||| |||||||| || | || || || | |||||||| |||||| Sbjct 10057 TGGTACAACATCAAGAGTGATAGTTTTTCCAGCGAGTGTCTTAATAAATATTTACATTTT 10116 Score = 109 bits (120), Expect = 1e-18 Identities = 192/276 (70%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||| || || || ||||||||||| | | ||| || | ||| | ||||| |||||| Sbjct 15893 AATCTACATTCCTCCTCTCAATCGTAATGCCAAGTGAAGTGTTGATTCTTTTTGAATATT 15952 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||| || | ||||| || ||||||| || || ||||||| || ||| | ||| Sbjct 15953 ATAGTCAGAGAGTGTTCTCCCGTCCTCTAATTACTTACCAGCAAAAACTAGTCTTTATTG 16012 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAA--AATAGTATCG 193301 ||| || || |||||||| | ||| ||||| | ||| ||| || || |||||| Sbjct 16013 ATCTGGTGGGATTCCTTCCCTGCTTTGGATTTTAGCTTT--GATTGAATCAACAGTATCC 16070 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || | || | || | | |||||||| || ||||| || || || || | ||||| Sbjct 16071 GAGGGATCTCCATCCACAACAATAGTTTTTCCAGTTAGTGTCTTAACGAAAAGTTGCA-- 16128 Query 193362 TTATTAGTAAAATAATTATTTTAAA--TAATATATA 193395 | | | || |||||| ||| |||| |||| |||| Sbjct 16129 TAAATTCTACAATAATAATTATAAATTTAATTTATA 16164 Score = 96.9 bits (106), Expect = 6e-15 Identities = 159/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| | | || | || | || || |||||| ||||| || Sbjct 9660 CCACCTCTCAATCTAAGAAAAAAGTGAAGGGTGGATTCCTTTTGAATATTGTAGTCTGAG 9719 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || | ||||| ||||| ||||||| || ||| | |||||| || || Sbjct 9720 AGTGTTCTTCCGTCTTTTAATTACTTTCCAGCAAAAACTAGTCTTTTTTGATCGGGGGGG 9779 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||||| ||||| ||||| | ||| | ||||||||| || | ||||| Sbjct 9780 ATTCCTTCTTAGTCTTG-ATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 9838 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || ||||| || ||||| || || | || || | |||| Sbjct 9839 TCAAGGGTGATTGTTTTTCCAGTTAGTGTCTTAATGAAAATCTACATT 9886 Score = 93.3 bits (102), Expect = 8e-14 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Plus Query 193129 ATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGT 193188 |||| || || ||||| ||| ||| ||| | ||| | |||||| |||||||||| Sbjct 15670 ATATTCCCCCCAACAATCTAAGAGCCAAATGAATTGTTGACTCTTTTTGGATATTATAGT 15729 Query 193189 CGGATAACGTTCTAGAA----TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 | |||| || | || || ||||||| ||| | |||||| | | | | | |||| Sbjct 15730 C--ATAAAGT--GAAAATCTGTCTTCTAATTATTTACTAGCAAAAGTGAGTTTTTATTGA 15785 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 ||||| || |||||||| || |||| ||||| | ||| | ||||||||| || Sbjct 15786 TCAGGTGGGATTCCTTCCTTTTCTTTAATTTTAGCTTTGACTGCATCAATAGTATCTGAT 15845 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | ||||| || ||||| || ||||| || |||| || |||| || || | |||| Sbjct 15846 GGTTCAACATCAAGAGTGATTGTTTTTCCAGTTAATGTCTTTATGAAAATCTACATT 15902 >seq753 Length=230 Score = 109 bits (120), Expect = 1e-18 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| || | || | ||| | || || |||||| ||||| || Sbjct 15 CCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 74 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || ||||||| ||||| |||||||| | ||| | |||||| || || Sbjct 75 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 134 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || |||| ||||| | ||| | ||||||||| || | ||||| Sbjct 135 ATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACA 194 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTAC 193348 || ||||| || ||||| || || || || || || Sbjct 195 TCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 229 >seq751 Length=235 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||||||||||| ||| || | || | ||| | || || |||||| ||||| || Sbjct 166 CCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAG 107 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || ||||||| ||||| |||||||| | ||| | |||||| || || Sbjct 106 AGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGG 47 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTT 193282 |||||||| || |||| ||||| | ||| Sbjct 46 ATTCCTTCCTTGTCTTAAATTTTAGCTTT 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899645662106640