Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq10 250 5e-61 seq2 140 6e-28 seq6 120 6e-22 >seq10 Length=460275 Score = 250 bits (276), Expect = 5e-61 Identities = 458/671 (68%), Gaps = 22/671 (3%) Strand=Plus/Plus Query 49649 TAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCACAATTCATACCCAATAA 49708 || |||||| || |||||||||| |||||| ||| | | ||||||| || | ||| Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 49709 TTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaattat 49768 || | ||||||||| ||| ||| ||||| ||||| || | ||||| | | || Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCA-GATGAA---- 101115 Query 49769 cataatt--at--attattt--tttgataatttatatttaatatgattcgcatatattaa 49822 |||||| || ||| ||| || |||| ||||| ||||| || || | ||| Sbjct 101116 -ATAATTTCATGGATTCTTTGATTGGATAGTTTATTGACCATATGCTTG---TAGAGTAA 101171 Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| ||||||||||||||||| || || || || ||||| |||||||| || |||| Sbjct 101172 ACAAGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAG 101231 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 ||||||||| | | ||||||||| | |||||| || | |||| || ||| ||||| Sbjct 101232 TCCTGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAA 101291 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAAT--TTATCATCT 50000 || || || ||| || || || |||| |||| | ||| || ||| ||||||| Sbjct 101292 GATGCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAA--ATGAATCATTATCAT-- 101347 Query 50001 AATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCT 50060 ||||| || || ||||| ||| || |||| || ||| | ||| || || || Sbjct 101348 -TGATCCATTTCATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCA 101406 Query 50061 TTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATAC 50120 | | ||| | ||||||||||| || || | |||||| Sbjct 101407 TGGAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATAT 101466 Query 50121 ATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAA 50180 |||||||||||| | |||||| || |||| |||| ||| || ||| ||||||| | Sbjct 101467 GTTTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGA 101526 Query 50181 TACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCT 50240 |||||||| | | ||||| ||| |||| |||||| ||||| |||||| || Sbjct 101527 ATTTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCA 101586 Query 50241 GCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAA 50300 || ||||| || || || ||||||||||| || ||||| | ||||| ||||||||| Sbjct 101587 GCAAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAA 101646 Query 50301 GATTCAAGATC 50311 || |||||| Sbjct 101647 TCTTTAAGATC 101657 >seq2 Length=701642 Score = 140 bits (154), Expect = 6e-28 Identities = 174/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | |||||||| || | || | ||||| ||||| || || Sbjct 528631 ATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCT 528572 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| | |||| || |||| ||| || || ||||| | ||| | || ||| ||| Sbjct 528571 GAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 528512 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| || | || | ||||| | ||| Sbjct 528511 GGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCA 528452 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT-TTTATT 192542 || || ||||| |||||||| || |||||||| || | || || ||||| |||||| Sbjct 528451 ACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATTTATT 528395 Score = 122 bits (134), Expect = 2e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||||||| | |||||||| || | || | ||||| ||||| || || Sbjct 527681 ATTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCT 527622 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| | | || || |||| ||| ||||| || || | ||| | || ||| ||| Sbjct 527621 GAGAGTGTTCTTCCGTCTTCTAATTATTTTCCAGCGAAAATAAGTCTTTATTAATCGGGT 527562 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||||||||| |||||| ||| || | || | ||||| | ||| Sbjct 527561 GGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCA 527502 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || || ||||| |||||||| || || ||||| || Sbjct 527501 ACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTT 527467 Score = 120 bits (132), Expect = 6e-22 Identities = 164/228 (72%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | |||||||| || | || | ||||| ||||| || || || Sbjct 528855 CCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAG 528796 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | |||| || |||| ||| || || ||||| | ||| | || ||| ||||| Sbjct 528795 AGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGG 528736 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| |||| |||||| ||| ||| | || | ||||| | || || Sbjct 528735 ATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTT-AACG 528677 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| ||||| |||||||| ||||| || | || || | |||| Sbjct 528676 TCAAGAGTGATGGTCTTACCAGTCAATGTCTTGACGAAGATTTACATT 528629 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | || || ||||| | || | ||||| ||||| || || || Sbjct 527906 CCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAG 527847 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||||| | |||| || |||| ||| || || ||||| | ||| | || ||| ||||| Sbjct 527846 AGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGG 527787 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 ||||||||||| |||| |||||| ||| ||| | || | ||||| | ||| || Sbjct 527786 ATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACA 527727 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||| |||||||| || || ||||| || | || || | |||| Sbjct 527726 TCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 >seq6 Length=529034 Score = 120 bits (132), Expect = 6e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 192346 TCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAG 192405 ||||||| |||||||| |||| | ||||| | || || |||| || |||||||| Sbjct 9923 TCTTTAGCAATATTATAGTCAGGGAGTGTTCTTCCACTTTCTAATTACTTTCCAGCAAAA 9982 Query 192406 ATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTA 192465 || | ||| | |||||| ||||| |||||||| || | ||| |||||| ||| || | | Sbjct 9983 ATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTTTGTTGGATTTTAGCTTTAAC-TGA 10041 Query 192466 GTTA-TAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAAT 192524 || | ||| ||||| | | | || || ||||| || ||||| |||| | ||| ||||| Sbjct 10042 GTCAATAGTATCTGTTGGTACAACATCAAGAGTGATAGTTTTTCCAGCGAGTGTCTTAAT 10101 Query 192525 AAATATCTGCATTTT 192539 |||||| | |||||| Sbjct 10102 AAATATTTACATTTT 10116 Score = 113 bits (124), Expect = 9e-20 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 192331 AAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAAT 192390 ||||| | || | |||||| ||||||||| ||| | | || | || || ||| Sbjct 15696 AAATGAATTGTTGACTCTTTTTGGATATTATAGTCATAAAGTGAAAATCTGTCTTCTAAT 15755 Query 192391 TGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATT 192450 | ||||| |||||| | | | | | |||||||||||| |||||||| || |||| ||| Sbjct 15756 TATTTACTAGCAAAAGTGAGTTTTTATTGATCAGGTGGGATTCCTTCCTTTTCTTTAATT 15815 Query 192451 TTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 192510 ||| ||| || | |||| |||||| | ||| || || ||||| || ||||| ||| Sbjct 15816 TTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCA 15875 Query 192511 GTTAATGTTTTAATAAATATCTGCATT 192537 |||||||| || || || |||| |||| Sbjct 15876 GTTAATGTCTTTATGAAAATCTACATT 15902 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| | |||||| | || || | || | ||||| |||||||| ||| Sbjct 15900 ATTCCTCCTCTCAATCGTAATGCCAAGTGAAGTGTTGATTCTTTTTGAATATTATAGTCA 15959 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| | || || |||| ||||||||||| | || ||| | |||||| ||| Sbjct 15960 GAGAGTGTTCTCCCGTCCTCTAATTACTTACCAGCAAAAACTAGTCTTTATTGATCTGGT 16019 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| | ||| |||||| ||| | | | || ||| || | ||| Sbjct 16020 GGGATTCCTTCCCTGCTTTGGATTTTAGCTTTGATTGAATCAACAGTATCCGAGGGATCT 16079 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 | || | | ||| ||||| ||||||| ||| |||| || | ||||| Sbjct 16080 CCATCCACAACAATAGTTTTTCCAGTTAGTGTCTTAACGAAAAGTTGCAT 16129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984470199193950