Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq10 129 2e-24 seq50 125 2e-23 seq15 116 1e-20 seq16 102 2e-16 >seq10 Length=460275 Score = 129 bits (142), Expect = 2e-24 Identities = 314/467 (67%), Gaps = 9/467 (2%) Strand=Plus/Minus Query 133202 GATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGT 133260 || ||||| || |||||| |||| | || || || |||||||| |||||||| ||||| Sbjct 101627 GAAGAAAAGCACTTTATTAAATATG-TATTGGCTTTCTTTGCTGCCAGTGATGGAATTGT 101569 Query 133261 TCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGTGCCTT 133320 ||| || |||| | || || |||||||||| | | |||||| | || Sbjct 101568 CAATGAGAACTTAGCATAACAATTCTGTACAGAAGTTCAAATTCCAGAAGCCAGATGTTT 101509 Query 133321 TTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTA-ATTG 133379 ||||| | | ||||| ||||||||||| |||||| ||||||||| |||| |||| Sbjct 101508 CTATGGATTTTAAATTGCCATGGAAAATATACATTCTGAAACATATTCT-CTCTTGATTG 101450 Query 133380 ATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTC 133439 |||||||||||| ||| | || | | || || | |||||| | ||| | Sbjct 101449 ATACTTACATCACTGATGAAAATGAAAAAAATTACTTACTCCATGCCATT-GACAATGTG 101391 Query 133440 CTTGT-ATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGT 133498 | ||| ||| ||||||| | ||||| || ||||||||| | || || || Sbjct 101390 CCTGTAATTCAAAAGAAGGCATCATGGGCAATGAAATGGATCAATGATAA---TGATTCA 101334 Query 133499 TTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTC 133558 |||||| | || ||||||| |||| || || ||||| || ||| |||| | || Sbjct 101333 TTTGCTGAAAGACTAATTGCTTTCGCTGCTGTTGAAGGCATCTTCTTCTCTGGTTCTTTT 101274 Query 133559 TGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAA 133618 || | ||||||||| | |||||| | || | || ||||| || || || ||| Sbjct 101273 TGTGCCATTTTTTGGATCAAAAAGAGATCACTTATGCCAGGACTAACATTCTCCAATGAA 101214 Query 133619 CTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCCGTTTTACT 133665 | || ||||| || || | | | || || || ||||| |||||| Sbjct 101213 TTGATATCAAGAGATGAAGGATTACATACTGATTTTGCTTGTTTACT 101167 >seq50 Length=273886 Score = 125 bits (138), Expect = 2e-23 Identities = 326/497 (66%), Gaps = 15/497 (3%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || |||| | ||| | ||||||||| | || || |||||| ||||| Sbjct 264461 CTATCAAATCTTCCAGGTCTAGTAAGTGCTGGGTCAAGTAATTCTTTTCTGTTAGTTGCA 264402 Query 288910 GCCAATACAA---CAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||| | || ||| || ||| |||||||||||| ||| | |||| Sbjct 264401 GCTAGTACTATTACATTAGTATCAGTTCC---AAATCCATCCATTTCAACTAATAATTGA 264345 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttt 289026 || || || | || ||||||||||| |||| || | || | |||||| Sbjct 264344 TTTAGAGTATTATCTCTTTCATCATTACCACCTATTTTAGCATC---------TCTTTTT 264294 Query 289027 ttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATT 289086 | || |||||||| ||||| ||||| || || | | || || || | | || | Sbjct 264293 CTTCCTACAGCATCTATTTCATCAATAAATATGATGCTTGGTGATTTAGCTTTAGCTTAT 264234 Query 289087 GCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 |||||| ||||| || | |||||||| ||||||| |||| || ||||| || || Sbjct 264233 TTAAATAAGTCTCTAACTCTACTTGCTCCAACACCAACAAACATCTCCACAAAATCTGAT 264174 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || || ||||| ||| ||| || ||||| || | |||| | ||| Sbjct 264173 CCACTAACGAAAAAGAATGGAACACCTGCCTCTCCTGCACAAGCTTTTGCCACCATTGTT 264114 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGAC 289266 ||||| || || |||||||| | | || | || | |||| ||| || || | Sbjct 264113 TTACCAGTACCTGGTGGTCCTGCAAGTAATGCACCTCTGGGTAATTTAGCACCCATTTCC 264054 Query 289267 TTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCA 289326 || ||||| ||| |||| | ||| || |||| ||||| | |||| ||||| ||| Sbjct 264053 TTGTATTTACGAGGTTTCTTAAGAAAATCAACAAATTCCTTGATTTCAAGCTTTGCTTCA 263994 Query 289327 TCACATCCTGCTACATC 289343 || ||||||| ||||| Sbjct 263993 TCTAATCCTGCAACATC 263977 >seq15 Length=399423 Score = 116 bits (128), Expect = 1e-20 Identities = 276/412 (67%), Gaps = 25/412 (6%) Strand=Plus/Minus Query 288901 TTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA 288960 || |||||| | | ||| | | | ||| || | ||||| |||||||| ||||||| Sbjct 394182 TTAGTTGCTCCTATTACTATTACACTTTCAGTCTATTTAAAACCATCCATCTCTGTTAAA 394123 Query 288961 ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTC 289020 |||| ||||| || ||| ||||| || || ||| | | || Sbjct 394122 ATTTAATTAATAGT------------ATCTCTTGAATATCCTGGATCTTATG---CTCTT 394078 Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 ||| || ||||| | ||| ||||| || || ||||| | || | |||||||| Sbjct 394077 CTTCTTCCACCAATACTATCTATTTCATCGATAAAAATAATTGCTGGTGCCTTTTGTCTT 394018 Query 289081 GCAA--TTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAA 289138 || || ||||| ||||| || | ||||| |||| || ||| ||||||| ||| Sbjct 394017 GCTGCCTTAAAAATA--TCTCTCACTCTAGATGCACCAACTCCTACAAACATTTCATCAA 393960 Query 289139 ATTCAGAAGCGGATACTTG--AATGAATGTTACATT-TGCTTCGCCTGCTACTGCCCTCG 289195 |||| || | | ||| || ||| | |||| |||||| || || | ||| || | Sbjct 393959 ATTCTGATCC--ACTCTTATAAAAGAAAGC-ACATCCTGCTTCTCCAGCCAATGCTCTTG 393903 Query 289196 CCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTG 289255 ||| ||||| ||||| || ||||| ||||| | |||| || ||||||||||| ||| | Sbjct 393902 CCAACAGTGTTTTACCAGTACCAGGAGGTCCTACCAATAAAATTCCCTTTGGTAATTTGG 393843 Query 289256 CCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTC 289307 | |||| | | ||||||| || |||| | |||||| ||||||||||| Sbjct 393842 CACCAGAATCAGTGTATTTCTTGGGATTCTTAAGAAATTCAACAATTTCCTC 393791 >seq16 Length=396119 Score = 102 bits (112), Expect = 2e-16 Identities = 242/361 (67%), Gaps = 6/361 (2%) Strand=Plus/Minus Query 59988 AACCAGTACCAATACCCTTTGTTCCATTGA-TAAGAATCATCGGGATAATTGGGATATAA 60046 |||| || || || || | | |||||| | |||| | ||| || |||||||| | |||| Sbjct 79025 AACCTGTTCCTATTCCTTCAGCTCCATTAACTAAGCA-CATTGGAATAATTGGAACATAA 78967 Query 60047 TAAACTGGCTCAACACTATCACCATCATCTTTTAAGTATGTTAAAACCTTGTCGTCAATT 60106 || |||| |||||| | | ||||||||||| || || | || | || || Sbjct 78966 TATTCTGGTTCAACAATTTAACCATCATCTTCTATATACTTCAATGAATGATCATCCTAC 78907 Query 60107 TCGGGAAATATAGCCCGAGTAATCTTGGATAATTGTGTGAAAATATACCTCTCGGATGCT 60166 || || || || |||||||| | |||| ||| ||||||| || | ||||| Sbjct 78906 TCTGGGAAGATGTATCGAGTAATTCTATTTAATGCTGTAGAAATATATCTTGCAGATGCA 78847 Query 60167 GCGTCCTTGCCACCCATAAGACGGGTTCCAAATTGTCCGTTTGGCTGGAATAGATTAATG 60226 ||||| ||||||||| | | ||||||| || ||||| | || |||||| Sbjct 78846 TGATCCTTACCACCCATAGCTCTACTACCAAATTAACCTTTTGGTAATAGTAAATTAATA 78787 Query 60227 TTGTTAGAGCCTACGAAATTTTGAGCGAGACCAACAATAGCACCATTTAAACTGGC--TT 60284 || || ||||| || ||||||||||| | || | || | || | || || | | Sbjct 78786 TTATTTGAGCCAACAAAATTTTGAGCCATCCCTATAACTGTAC--TAACAAGTGACATAT 78729 Query 60285 CACCGTGATGATATCCAGAATGTTCTGAAACATATCCACTGAATTGTGCGACTTTAATTT 60344 | || ||||||||| | ||||| |||| || ||| |||| |||| | ||||| || | Sbjct 78728 CTCCATGATGATATGCTGAATGCTCTGCAATATAACCACCCAATTAAACTACTTTTATCT 78669 Query 60345 C 60345 | Sbjct 78668 C 78668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471802947595849