Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq38 107 2e-18 seq48 91.5 2e-13 >seq38 Length=305773 Score = 107 bits (118), Expect = 2e-18 Identities = 124/163 (76%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 194233 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCTCAAAAAGGAACTTG 194291 ||| | || || |||| || |||||||||||| || |||| ||||| || ||||| Sbjct 201108 TTAAGAATTCCATAAATTGGTGATAAATTTTGTAGTAGACATGGA-CAAAAGGGTACTTG 201050 Query 194292 TGGTATGATTTATTCACAAGAAGATATGCCATTTAC---AACTTCAGGTATGGTACCAGA 194348 |||||||| ||| | |||||||| | |||||||| |||| ||||| |||||| Sbjct 201049 TGGTATGACTTACAGATAAGAAGATCTTCCATTTACTTTAACT---GGTATTTCACCAGA 200993 Query 194349 TATTATTATCAATCCAAATTGTATTCCGTCCAGAATGACCATT 194391 | ||| ||| |||||| |||||||||| || |||||||| ||| Sbjct 200992 TCTTACTATTAATCCACATTGTATTCCATCAAGAATGACTATT 200950 >seq48 Length=276533 Score = 91.5 bits (100), Expect = 2e-13 Identities = 209/304 (69%), Gaps = 13/304 (4%) Strand=Plus/Plus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 172588 ||||||||| ||||| ||||||||| ||||||||||| || || |||| | || || Sbjct 42720 TGATTTAGGACCAATATATGGATTTTAATGGAGACATTTTGGTGCATAATACACTGATTG 42779 Query 172589 TGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATT-AATACTTTAC 172647 | || ||||||||||| ||||||| || ||||| | | ||| | || ||| Sbjct 42780 TAATGCAGATTACACAAATAAAGGAGTCGATCAATTGAAAGATGTAATTCACTAACTTA- 42838 Query 172648 AAAACAACCCAGAAAGTAGAAGGATGTTAATTGAT-AG-TTGGAATGTACCTCAACTTGA 172705 ||||||| || || |||||||| || | || || || |||||| | | ||| || | Sbjct 42839 AAAACAATCCGGATAGTAGAAGAATCT--GTTTATCAGCTTGGAA--TCCTTCAGATTTA 42894 Query 172706 TAAA--ATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCAGaaaaaaaTCA 172763 | | |||| | |||||||| ||| || | |||||||||| || || Sbjct 42895 AAGATTATGGCATTACCTCCTTGTCATGTATTGTCTTAATTTTATGT-GTCTAATGGTC- 42952 Query 172764 ATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAAT 172823 ||| |||| | | ||| | |||||| |||||| |||||||| ||||||| ||| Sbjct 42953 -GTTTAAGTTGTATGATGTATTAGAGATCATGTGATTTTGGATTGGGAGTACCTTTCAAT 43011 Query 172824 ATTG 172827 ||| Sbjct 43012 GTTG 43015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632483456944760