Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2 111 1e-19 seq6 89.7 5e-13 seq56 82.4 7e-11 >seq2 Length=701642 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | || || | || || ||||| || || || || || ||| | | Sbjct 527680 ATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 527739 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || ||| |||||||||||||||| || |||||| || Sbjct 527740 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTAA 527799 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||| | | || ||| |||| | ||||| || || Sbjct 527800 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAAT 527859 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||||| ||||| || ||||||||| || Sbjct 527860 ATTCAAAAAGAATCCACACTTCATTTGGTGTTGAGA 527895 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || |||| || ||||| || || || || || ||| | | Sbjct 528402 ATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 528461 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || |||||||| ||||||||||| || |||||| || Sbjct 528462 GACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCGATTAA 528521 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||| | | || ||| |||| | ||||| || || Sbjct 528522 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAAT 528581 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||||| ||||| ||||| || ||| || Sbjct 528582 ATTCAAAAAGAATCAACACTCCACTTAGTATTGAGA 528617 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | ||||| | || || | || ||||| || || || || || || || | | Sbjct 528630 ATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGACGTT-AACCATCA 528688 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | || | || ||| || ||| |||||||||||||||| || |||||| || Sbjct 528689 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTAA 528748 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| ||||| ||| | | || ||| |||| | ||||| || || Sbjct 528749 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAAT 528808 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||||| ||||| ||||| || ||| || Sbjct 528809 ATTCAAAAAGAATCAACACTCCACTTAGTATTGAGA 528844 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 24728 ACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACGGTAAAACAA 24787 || || ||||| || || || || || ||| | | |||||| | || | || ||| Sbjct 527476 ACAGGAAAAACCATCACTCTTGATGTTGAACCATCAGACACAATTGATGCAGTCAAAGCT 527535 Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 || |||||||| ||||||||||| || |||||| || || | | || || || || ||| Sbjct 527536 AAAATCCAAGATAAAGAAGGAATCCCACCCGATTAATAAAGACTTATTTTCGCTGGAAAA 527595 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 | | || || |||| | ||||| || || |||||||| ||||| ||||| ||| Sbjct 527596 TAATTAGAAGACGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCAACACTCCAC 527655 Query 24908 TTGGTGTTGCGA 24919 || || ||| || Sbjct 527656 TTAGTATTGAGA 527667 >seq6 Length=529034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| |||| || || || || ||||| || || || || || ||| | | Sbjct 11098 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 11039 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || ||||||| |||||||| || ||||||||| Sbjct 11038 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 10979 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || | | || || |||| | || || || || Sbjct 10978 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 10919 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| ||||| || | ||||| | ||||| Sbjct 10918 ATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 10872 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| |||| || || || || ||||| || || || || || ||| | | Sbjct 12080 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 12021 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || ||||||| |||||||| || ||||||||| Sbjct 12020 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 11961 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || | | || || |||| | || || || || Sbjct 11960 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 11901 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| ||||| || | ||||| | ||||| Sbjct 11900 ATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 11854 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || ||| |||| || || || || ||||| || || || || || ||| | | Sbjct 12535 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 12476 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || ||||||| |||||||| || ||||||||| Sbjct 12475 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 12416 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || | | || || |||| | || || || || Sbjct 12415 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 12356 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| ||||| || | ||||| | ||||| Sbjct 12355 ATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 12309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/206 (69%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| |||| || ||||| || ||||| || ||||| || || || || || ||| | | Sbjct 9885 ATGTAGATTTTCATTAAGACACTAACTGGAAAAACAATCACCCTTGATGTTGAACCATCA 9826 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || ||| ||||| |||||||||| || ||||||||| Sbjct 9825 GATACTATTGATGCAGTCAAAGCTAAAATC-AAGACTAAGAAGGAATCCCCCCCGATCAA 9767 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | | ||||| || || | | | || |||| | ||||| || || Sbjct 9766 AAAAGACTAGTTTTTGCTGGAAAGTAATTAAAAGACGGAAGAACACTCTCAGACTACAAT 9707 Query 24884 ATTCAAAAGGAATCGACACTACACTT 24909 |||||||||||||| || || ||||| Sbjct 9706 ATTCAAAAGGAATCCACCCTTCACTT 9681 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/227 (68%), Gaps = 1/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||| | || || |||| || || || || ||||| || || || || || ||| | | Sbjct 12307 ATGTAAATTTTCGTTAAGACACTCACTGG-AAAACAATCACTCTTGATGTTGAACCATCA 12249 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || ||| || || ||||||| |||||||| || ||||||||| Sbjct 12248 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 12189 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | || ||||| || || | | || || |||| | || || || || Sbjct 12188 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 12129 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||||||||| ||||| ||||| || | ||||| | ||||| Sbjct 12128 ATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGG 12082 >seq56 Length=254943 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 |||| | |||||| | ||| |||||||||| || || || |||||||| | |||||| Sbjct 216898 TATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAATTCTTTTGATTA 216839 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGG 139220 |||||| ||||| ||||||||||| | |||||| || Sbjct 216838 CTTTTTTAATTACATGCATCTTTGTATAACATATAAGG 216801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449893230369560