Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq39 89.7 4e-13 seq2 82.4 6e-11 >seq39 Length=303829 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||| |||| ||||| ||||| ||||| || || || || || | || || ||| Sbjct 62851 ATGTAAATTTTTGTTAAAACCTTAACAGGTAAGACAATCACACTTGATGTCGAACCTTCT 62910 Query 110333 GATACTGTCGGC-CAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || ||| ||| |||| || |||||| ||||| |||||| | ||| ||||| Sbjct 62911 GACACCATCGATGCAGTTAAAGCA-AAGATTTAGGACAAGGAAGGCATTCCCCCCGATCA 62969 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 | |||||||||||| ||| || ||||| || || || | ||||| | | |||||||| Sbjct 62970 ATAAAGACTTATTTTTGCAGGAAAACAACTTGAAGACGGAAGAACTCTTTCAGATTACAA 63029 Query 110452 CATTCAAAAAGAATCTAC 110469 || |||| ||||| || Sbjct 63030 TATCTAAAAGGAATCAAC 63047 >seq2 Length=701642 Score = 82.4 bits (90), Expect = 6e-11 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | || ||| || |||||||||| | || || ||| | | || Sbjct 528722 GACAAAGAAGGAATCCCACCCGATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAA 528781 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | | || ||||| |||||||||||||| || | ||| | || || Sbjct 528782 GATGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCAACACTCCACTTAGTATTG 528841 Query 110486 AGACTGCGAGGGGGAA------AAAATAAATAAGTTTGTATT 110521 ||||| |||| |||| ||| |||||| |||||||| Sbjct 528842 AGACTTAGAGGTGGAAACTGATAAATTAAATATTTTTGTATT 528883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412837690519061