Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq39 116 3e-21 seq6 111 1e-19 seq2 109 4e-19 >seq39 Length=303829 Score = 116 bits (128), Expect = 3e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || || | || || || ||||| || ||||| |||| || || ||||| | | Sbjct 63077 CCTCCTCTTAATCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAA 63018 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || | || || |||||||| || ||| | || | ||||| ||||| || ||| Sbjct 63017 AGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGA 62958 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || ||||| | ||| |||| ||| || | || | ||||||||| |||| || Sbjct 62957 ATGCCTTCCTTGTCCTA-AATCTTTGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGAC 62899 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || || || ||||||||||||||||| || | ||| Sbjct 62898 ATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACAAAAATTTACAT 62851 >seq6 Length=529034 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || || ||||| || ||||| |||||||| || || || | Sbjct 11853 TCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 11912 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || || |||||| | || | ||||| ||||| || || Sbjct 11913 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 11972 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||||| |||||| | |||||| | || | ||| || || |||| | Sbjct 11973 GATTCCTTCCTTGTCTTA-AATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAA 12031 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | |||||||| || ||||| ||||| | || ||||||||||| | |||| Sbjct 12032 CATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATT 12081 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || || ||||| || ||||| |||||||| || || || | Sbjct 10871 TCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 10930 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || || |||||| | || | ||||| ||||| || || Sbjct 10931 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 10990 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||||| |||||| | |||||| | || | ||| || || |||| | Sbjct 10991 GATTCCTTCCTTGTCTTA-AATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAA 11049 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||||| || ||||| ||||| | || ||||||||||| | ||| || Sbjct 11050 CATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATGTT 11101 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || || ||||| || ||||| |||||||| || || || | Sbjct 12308 TCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 12367 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | || || | || || |||||| | || | ||||| ||||| || || Sbjct 12368 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 12427 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || || || ||||||| |||||| | |||||| | || | ||| || || |||| | Sbjct 12428 GATTCCTTCCTTGTCTTA-AATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAA 12486 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||||| || ||||| ||||| | || ||||||||||| | ||| || Sbjct 12487 CATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACAAATATTTACATGTT 12538 Score = 100 bits (110), Expect = 2e-16 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| ||||| | || || || ||||| || ||||| |||||||| || || || | Sbjct 14633 TCCTCCTCTCAATCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 14692 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAA-TCTTTGCTGATCCGGCG 29677 | || | || || | || || |||||| | || | ||||| ||||| || | Sbjct 14693 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATAGAGTCTTTATTGATCGGGTG 14752 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCT 29736 | || || || ||||||| |||||| | |||||| | || | ||| || || |||| Sbjct 14753 GGATTCCTTCCTTGTCTTA-AATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCA 14811 Query 29737 ACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||||| || ||||| ||||| | || ||||||||||| | ||| || Sbjct 14812 ACATCAAGAGTGATTGTTTT-CCAGTGAGTGTCTTAACAAATATTTACATGTT 14863 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29579 CCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGA 29638 ||| ||||| || ||||||||||||||||| || || | | | | ||| | | Sbjct 15466 CCATATGAACAGTTGATTCTTTTTGAATGTTGTACTCAGAGAGAATCCTTCCATCTTATA 15525 Query 29639 GTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTA 29698 || ||| || || | | | |||||| ||| || || | || || ||| | || | Sbjct 15526 ATTATTTTCCTGCGAAAAGGAGTCTTTGTTGACATGGTGGTGTTCCTTCCTTGGCATGGA 15585 Query 29699 ATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGC 29758 ||| ||||||| | ||||||||||| || |||| || |||||||| |||||||| | Sbjct 15586 TTTTAGGTTTGACTGAATCTACAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTCC 15645 Query 29759 CAGTTAAGGTTTTAACAAATATC 29781 |||| | || | |||||| ||| Sbjct 15646 CAGTAAGTGTCTGAACAAAGATC 15668 >seq2 Length=701642 Score = 109 bits (120), Expect = 4e-19 Identities = 167/238 (70%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 29550 TTATCGTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTT 29609 ||||| | ||| || || | | || |||||||||||| ||||||||||||||||| || Sbjct 527916 TTATCAGTTTCCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATT 527857 Query 29610 ATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTG 29669 || || | | || | ||| || | || ||| || || | || | ||||| | Sbjct 527856 GTAGTCTGAGAGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTA 527797 Query 29670 ATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGA 29729 ||| || || || || |||||||||| | ||| |||||||| || | ||||| || Sbjct 527796 ATCGGGTGGGATTCCTTCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGA 527737 Query 29730 AAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||| || |||||||| || ||||| || || || || || || || || | |||| Sbjct 527736 TGGTTCAACATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29578 ACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCG 29637 || || || || || |||||||||||||| || || || | | || | ||| || Sbjct 528610 ACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCTTCCATCTTCT 528551 Query 29638 AGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGT 29697 | || ||| || || | || | ||||| | ||| || || || || ||||| ||||| Sbjct 528550 AATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTATCTTGG 528491 Query 29698 AATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTG 29757 | ||| |||||| | || | ||||| || |||| || |||||||| || ||||| Sbjct 528490 ATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGGTTTTT 528431 Query 29758 CCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || || || || || ||||| || Sbjct 528430 CCTGTTAATGTCTTTACGAAAATTTGCATATT 528399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385215552094557