Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq38 114 2e-20 seq92 93.3 5e-14 seq48 89.7 7e-13 >seq38 Length=305773 Score = 114 bits (126), Expect = 2e-20 Identities = 123/160 (77%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 193437 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCAGGA-ATGGCCCAAAAAGGAACTTG 193495 ||| | || || |||| || |||||||||||| || |||| | |||| || ||||| Sbjct 201108 TTAAGAATTCCATAAATTGGTGATAAATTTTGTAGTAGACATGGAC-AAAAGGGTACTTG 201050 Query 193496 TGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAGATAT 193555 |||||||| ||| | |||||||| | |||||||| | ||||| ||||||| | Sbjct 201049 TGGTATGACTTACAGATAAGAAGATCTTCCATTTACTTTAACTGGTATTTCACCAGATCT 200990 Query 193556 TATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 || |||||||||| ||||||||||||| |||||||| ||| Sbjct 200989 TACTATTAATCCACATTGTATTCCATCAAGAATGACTATT 200950 >seq92 Length=167017 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 51956 AACATTTAAAATGAATTTGGC--TATGACTAAAGCATATAATGCTGATTTTGATGGGGAT 52013 |||||||| | | ||||| | |||| || |||||||||||||||||||||| ||| Sbjct 3093 AACATTTAGATTAAATTTATCAGTATG--TACTCCATATAATGCTGATTTTGATGGTGAT 3150 Query 52014 GAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAATTA 52070 ||||||||| | ||||| || |||| |||| | ||| |||||||||| || | ||| Sbjct 3151 GAAATGAATATGCATGTACCATAATCTTATGAAACTATTGCTGAATTAAAATATTTA 3207 >seq48 Length=276533 Score = 89.7 bits (98), Expect = 7e-13 Identities = 111/148 (75%), Gaps = 8/148 (5%) Strand=Plus/Plus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGACTG 168715 ||||||||| ||||| ||||||||| ||||||||||| || || |||| | ||| || Sbjct 42720 TGATTTAGGACCAATATATGGATTTTAATGGAGACATTTTGGTGCATAATACACTGATTG 42779 Query 168716 TGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAAT-ACT---T 168771 | || |||||||||| ||||||| || ||||| | || | ||| | ||| | Sbjct 42780 TAATGCAGATTACACAAATAAAGGAGTCGATCAATTGA---AAGATGTAATTCACTAACT 42836 Query 168772 TACACAACAATCCGGAAAATAGAAGAAT 168799 || | ||||||||||| | ||||||||| Sbjct 42837 TA-AAAACAATCCGGATAGTAGAAGAAT 42863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635171430837560