Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq38 113 6e-20 seq92 98.7 1e-15 seq48 87.8 2e-12 >seq38 Length=305773 Score = 113 bits (124), Expect = 6e-20 Identities = 125/163 (77%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 192990 TTACGTATACCTGAAATAGGGGATAAATTTTGTTCGGGA-ATGGCCCAAAAAGGAACTTG 193048 ||| | || || |||| || |||||||||||| || |||| | |||| || ||||| Sbjct 201108 TTAAGAATTCCATAAATTGGTGATAAATTTTGTAGTAGACATGGAC-AAAAGGGTACTTG 201050 Query 193049 TGGTATGATTTATTCACAAGAAGATATGCCATTTAC---AACTTCAGGTATGGTACCAGA 193105 |||||||| ||| | |||||||| | |||||||| |||| ||||| |||||| Sbjct 201049 TGGTATGACTTACAGATAAGAAGATCTTCCATTTACTTTAACT---GGTATTTCACCAGA 200993 Query 193106 TATTATTATTAATCCAAATTGTATTCCGTCCAGAATGACCATT 193148 | ||| |||||||||| |||||||||| || |||||||| ||| Sbjct 200992 TCTTACTATTAATCCACATTGTATTCCATCAAGAATGACTATT 200950 >seq92 Length=167017 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 50406 AACATTTAAAATGAATTTAGC--TATGACTAAAGCATATAATGCTGATTTTGATGGGGAT 50463 |||||||| | | |||||| | |||| || |||||||||||||||||||||| ||| Sbjct 3093 AACATTTAGATTAAATTTATCAGTATG--TACTCCATATAATGCTGATTTTGATGGTGAT 3150 Query 50464 GAAATGAATTTACATGTTCCTCAATCATATGGAGCTACTGCTGAATTACAAGAATTA 50520 ||||||||| | ||||| || |||| |||| | ||| |||||||||| || | ||| Sbjct 3151 GAAATGAATATGCATGTACCATAATCTTATGAAACTATTGCTGAATTAAAATATTTA 3207 >seq48 Length=276533 Score = 87.8 bits (96), Expect = 2e-12 Identities = 208/304 (68%), Gaps = 13/304 (4%) Strand=Plus/Plus Query 171741 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGACTG 171800 ||||||||| ||||| ||||||||| ||||||||||| || || |||| | || || Sbjct 42720 TGATTTAGGACCAATATATGGATTTTAATGGAGACATTTTGGTGCATAATACACTGATTG 42779 Query 171801 TTATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATT-AATACTTTAC 171859 | || ||||||||||| ||||||| || ||||| | | ||| | || ||| Sbjct 42780 TAATGCAGATTACACAAATAAAGGAGTCGATCAATTGAAAGATGTAATTCACTAACTTA- 42838 Query 171860 AAAACAACCCAGAAAGTAGAAGGATGTTAATTGAT-AG-TTGGAATGTACCTCAACTTGA 171917 ||||||| || || |||||||| || | || || || |||||| | | ||| || | Sbjct 42839 AAAACAATCCGGATAGTAGAAGAATCT--GTTTATCAGCTTGGAA--TCCTTCAGATTTA 42894 Query 171918 TAAA--ATGGTTCTTCCTCCTTGCCACACTTTAGCACAATTTTATGTCAGaaaaaaaTCA 171975 | | |||| | |||||||| || || | |||||||||| || || Sbjct 42895 AAGATTATGGCATTACCTCCTTGTCATGTATTGTCTTAATTTTATGT-GTCTAATGGTC- 42952 Query 171976 ATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTATAAT 172035 ||| |||| | | ||| | |||||| |||||| |||||||| ||||||| ||| Sbjct 42953 -GTTTAAGTTGTATGATGTATTAGAGATCATGTGATTTTGGATTGGGAGTACCTTTCAAT 43011 Query 172036 ATTG 172039 ||| Sbjct 43012 GTTG 43015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628525095390720