Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq10 111 3e-19 >seq10 Length=460275 Score = 111 bits (122), Expect = 3e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 142959 ATTTATACAGATAAAGATGAGTGGACTACTTGGaaaaaaaTACCCGATCCCGTCTTGCAT 143018 || |||| |||| |||||||||||| |||||| | | | | ||||| || |||||| Sbjct 163131 ATATATAAAGATGAAGATGAGTGGAGCACTTGGTAGTAGAGAAATGATCCAGTATTGCAT 163072 Query 143019 ATAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTA 143078 || ||| | |||| |||||| ||| ||| || |||| || || | |||||||| | Sbjct 163071 ATTGAATTGAGGAAATGGGCAGATTGTTTGATTGTAGCTCCACTATCTGCAAATACTATG 163012 Query 143079 GCAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGAT 143138 || ||| ||| || || |||| |||||| | || ||| |||| ||||||| |||||| Sbjct 163011 GCTAAAGTAGTTAATGGATTATGTGATAATCTTCTTACAAATATAATAAGAGCATGGGAT 162952 Query 143139 ATAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATT 143198 ||| || | ||| || || || ||||| | | |||| || |||| || Sbjct 162951 TATGGTAAGCCAATGATTGTTGCACCAGCCATGAACACATTAATGTATGAGAATCCAATA 162892 Query 143199 ACAGAAAAACATAT 143212 ||| | ||||| || Sbjct 162891 ACAAATAAACAAAT 162878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903402425618720