Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq10 228 2e-54 seq56 172 1e-37 seq16 116 9e-21 seq92 98.7 2e-15 seq94 87.8 4e-12 seq39 87.8 4e-12 seq74 84.2 5e-11 >seq10 Length=460275 Score = 228 bits (252), Expect = 2e-54 Identities = 526/780 (67%), Gaps = 13/780 (2%) Strand=Plus/Minus Query 131522 GATATTGATGATTGGGAAAAATTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCTT 131581 ||| || | |||||||||||||||| | | ||||| | ||| || | || | Sbjct 101657 GATCTTAAAGATTGGGAAAAATTAAAGTCAGAAGAAAAGCACTTTATTAAATATGTATTG 101598 Query 131582 GCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTA-ATTTCATTCA 131640 || ||||| || | |||||||| ||||| | ||| || ||| || | | ||| | Sbjct 101597 GCTTTCTTTGCTGCCAGTGATGGAATTGTCAATGAGAA-CTTAGCATAACAATTCTGTAC 101539 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTAT 131700 |||| || | ||||| |||| | || ||||| |||| || || | ||| ||| Sbjct 101538 AGAAGTTCAAATTCCAGAAGCCAGATGTTTCTATGGATTTTAAATTGCCATGGAAAATAT 101479 Query 131701 TCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAA 131760 ||| || | ||||| | |||||||| | | | | ||||| |||| ||||| Sbjct 101478 ACATTCTGAAACATATTCTCTCTTGATTGATACTTACATCACTGATGAAAATGAAAAAAA 101419 Query 131761 TAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTAT 131820 | | ||| | |||| | | || | |||| |||| ||||||| ||| |||||| || Sbjct 101418 TTACTTACTCCATGCCATTGACAATGTGCCTGTAATTCAAAAGAAGGCATCATGGGCAAT 101359 Query 131821 TAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGT 131880 ||||||| ||| ||||| | | ||| || |||||| | ||||| ||| ||| Sbjct 101358 GAAATGGA-TCA--ATGATAATGATTCATTTGCTGAAAGACTAATTGCTTTCGCTGCTGT 101302 Query 131881 TGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATT 131940 |||||| || ||||| || ||| |||| ||||| || |||||| | || ||| | | | Sbjct 101301 TGAAGGCATCTTCTTCTCTGGTTCTTTTTGTGCCATTTTTTGGATCAAAAAGAGATCACT 101242 Query 131941 GATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGA 132000 ||||| ||||| |||| |||||| |||| || || |||||||||| ||| |||||||| Sbjct 101241 TATGCCAGGACTAACATTCTCCAATGAATTGATATCAAGAGATGAAGGATTACATACTGA 101182 Query 132001 ATTTGCTATATTAATCTATAGAAAATTTGCT-GATAAACTTGATGAAA--ATAATATTAA 132057 |||||| ||| |||| | | || || | ||||||| || || | | || | Sbjct 101181 TTTTGCTTGTTTACTCTACA-AGCATATGGTCAATAAACT--ATCCAATCAAAGAATCCA 101125 Query 132058 ACAACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTG 132117 || |||| || |||| ||| || ||||| || |||| ||||| || || Sbjct 101124 TGAAATTATTTCATCTGCTGTTGCTATTGAAAAGGAATTCATTAGTGAAGCATTACCAGT 101065 Query 132118 CAATTTGATTGGGATGAATGC-TGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATC 132176 | || ||||| |||||| | |||| ||||| | ||||||||||| ||||||||| Sbjct 101064 AGAATTAATTGGAATGAATTCAACACTC-ATGAAACAATACATTGAATTTGTTGCTGATA 101006 Query 132177 GTTTAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGGA 132236 | ||||| | ||||| | | ||||||| || | || || | |||| Sbjct 101005 GACTAATTTTCGCTCTTGGTGCTCCAAAGATTTTCAATGTGAAGAATCCTTTCGAGTGGA 100946 Query 132237 TGGAGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAAGTCGTGTATCTGAGTACT 132296 |||| ||||| || |||| ||||| |||||||||||||| | ||| ||| |||| Sbjct 100945 TGGATATGATTTCCCTCTAAGGAAAAACCAACTTCTTCGAAAGAAGAGTAGGTGATTACT 100886 >seq56 Length=254943 Score = 172 bits (190), Expect = 1e-37 Identities = 329/479 (69%), Gaps = 7/479 (1%) Strand=Plus/Plus Query 110681 TGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGG--- 110737 |||| | || || ||| ||| ||| || || || ||||| | |||||| || |||| Sbjct 216404 TGGATTGGTGCCTATGCTAAAAGTATTTAATGATACTGCCAGATATGTTGATTAAGGAGG 216463 Query 110738 TGGTAAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGA 110797 |||||||||||| || |||||||| | || | |||||||||||| || ||| | || Sbjct 216464 TGGTAAGAGAAAAGGTTCATTTGCCGTATACTTGGAACCTTGGCATAGTGACATA-TGGA 216522 Query 110798 ATTCT-TAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTT 110856 || | | || | ||||| ||||| ||| |||||||| |||| || | |||||||||| Sbjct 216523 GTTTTCTTTAATTACGTAAGAATCATGGAATTGAAGAATAAAGGACAAGAGATTTATTTT 216582 Query 110857 ATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTC 110916 | | | |||||| | |||||||| ||| || | ||| ||||| ||| ||| ||| Sbjct 216583 TAGGATTATGGATTCCTGATTTATTTATGTAAAGAGTTAAAGAAGATGCAGATTGGACTC 216642 Query 110917 TTATGTGTCCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACC 110976 ||||||| || || | ||| || || | ||| |||||| ||||||| | | Sbjct 216643 TTATGTGCCCAAATGAATGTCCAGGGCTTTAAGATTGTTATGGAGAAGAGTTCAATAAAT 216702 Query 110977 TTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTT 111036 | || || ||||||| || || | | | | ||| ||| || | | | Sbjct 216703 TATATTAATCATATGAATAAAAAAAAATGGGAAGAAGTACAATGAAGGCTAGAGCATTAT 216762 Query 111037 GGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGAT- 111095 || |||| | || || || | ||||||| |||||||| || || |||||| Sbjct 216763 GGCAAGAAATAATAGATGCATAAATATCAACTGGATTGCCTTATATGTTATACAAAGATG 216822 Query 111096 CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTG 111154 ||| |||| ||| |||||||| |||||||||||||||||| ||||||||| || Sbjct 216823 CAT-GTAATTAAAAAAGTAATCAAAAGAATTTAGGAACAATTAAAAGTAGTAATTTATG 216880 >seq16 Length=396119 Score = 116 bits (128), Expect = 9e-21 Identities = 354/533 (66%), Gaps = 12/533 (2%) Strand=Plus/Plus Query 279806 GAATTTATTGATAAAGAACTGATCCATTTTTCTAATTATGATGTTCATCGTTCTATTCC- 279864 || ||| || |||||||| |||| || ||||||| ||| | | || || || Sbjct 78536 GATTTTGTTCATAAAGAATTGATTCACTTTTCTATGGCTGACAACATTAGATCAATACCC 78595 Query 279865 TCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAG 279924 ||| | | |||||||||||||||| | || | ||| | | ||| ||||||||| | Sbjct 78596 TCAATCA-TGGATGGTTTGAAACCAGGATAGAGAAAGGTATTGTTCGCTTGTTTCAAGCG 78654 Query 279925 AAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGG 279984 || ||| | |||| || || | | | || | |||||| || |||| ||| ||| Sbjct 78655 TAATTTGAAATAGGAGATAAAAGTAGTTTAATTGGGTGGTTATATTGCAGAGCATTCAGC 78714 Query 279985 TTATCATCACGGTGAAGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTAT 280044 |||||||| || || ||| ||| || | || |||| | || ||| ||||| | Sbjct 78715 ATATCATCATGGAGATATGTCACTTGTTAGTACAGTTATAGGGATGGCTCAAAATTTTGT 78774 Query 280045 GGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGTATTCACAA 280104 | ||||| || | ||| | || | |||||| ||| |||||||| | | | Sbjct 78775 TGGCTCAAATAATATTAATTTACTATTACCAAAAGGTTAATTTGGTAGTAGAGCTATGGG 78834 Query 280105 TGGAAAAGATCATGGTAGTGCTCGTTACATACATACATGTCTTTCAGA-TATTACAAACA 280163 ||| || ||||||| ||| | || || |||| | || | | ||||| | Sbjct 78835 TGGTAAGGATCATGCATCTGCAAGATATATTTCTACA-GCATTAAATAGAATTAC--TCG 78891 Query 280164 AGTTAT-TTATCA-ATTCTGATAATGCTTCATTAGAGTGGCTAGAGGATGATGGTCTTGC 280221 | || || || | | ||| || |||||| ||| |||| ||||||||| Sbjct 78892 ATACATCTTCCCAGAGTAGGATGATCATTCATTGAAGTATATAGAAGATGATGGTTAAAT 78951 Query 280222 TATTGAACCAACATATTATGCTCCAATTATCCCTATGATTCTT-GTTAATGGTGCTCAAG 280280 | |||||||| |||||||| ||||||||| || ||| | ||| |||||||| ||| ||| Sbjct 78952 TGTTGAACCAGAATATTATGTTCCAATTATTCCAATG-TGCTTAGTTAATGGAGCTGAAG 79010 Query 280281 GAATTGGAACAGGTTATTCTACATCTAT-CCCAATGTACAATCCAATTGATAT 280332 |||| |||||||||| || || | ||| |||| || ||||| |||| || Sbjct 79011 GAATAGGAACAGGTTGGTCAACTTATATAAGCAAT-TATGATCCAGTTGAAAT 79062 >seq92 Length=167017 Score = 98.7 bits (108), Expect = 2e-15 Identities = 117/155 (75%), Gaps = 4/155 (3%) Strand=Plus/Plus Query 305357 CATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATTGA-CATTTCGAT 305414 |||| |||| |||||||| |||| ||| ||||| | | ||| | ||||| ||| Sbjct 3046 CATAGAATGAGTATGATGGGACATAGAGTTC--GTATTCTACCATATTCAACATTTAGAT 3103 Query 305415 TAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGC 305474 ||||| || | ||||| || |||||||| ||||||||||| |||||||||||||||| Sbjct 3104 TAAATTTATCAGTATGTACTCCATATAATGCTGATTTTGATGGTGATGAAATGAATATGC 3163 Query 305475 ATGTACCTCAATCAAAGGTTACAATGACTGAATTA 305509 ||||||| |||| | | || || |||||||| Sbjct 3164 ATGTACCATAATCTTATGAAACTATTGCTGAATTA 3198 >seq94 Length=140520 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 167249 ACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTACG 167308 |||||||||||| |||||| ||||||||| |||||||| | ||| ||||||| | Sbjct 28479 ACCAGCATTATCAAATTCACCACAATAATTTGGAGCTGAAAAAAGAGTTACTAATTGTCT 28538 Query 167309 ATTGAAAAATAATTCATAACCATCTTCAACAAC 167341 || |||| |||||||| |||||||||||||| Sbjct 28539 TTTTGAAAAGAATTCATAGCCATCTTCAACAAC 28571 >seq39 Length=303829 Score = 87.8 bits (96), Expect = 4e-12 Identities = 117/160 (73%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||||| ||||||| || |||| ||| || ||||||||| | | | | Sbjct 300952 GTTATTTTTAATAGATAACCATCTCTTCATAGAATTTCAATGATGGCTTTTCGTGCAAGA 301011 Query 305390 GTAT-TATCTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 || || ||| | ||| || |||| |||| | || ||||| |||| |||||| || Sbjct 301012 GTGGATAAATGGCAT-ACACTTAGATTTAATGAATGTATATGTACTCCTTTTAATGCTGA 301070 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||| |||||||||||||| ||| | ||| || || Sbjct 301071 TTTTGATGGTGATGAAATGAATATTCATCTTCCTTAAACA 301110 >seq74 Length=199215 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 72240 ATTTGAATCAGGACCCGAGTTAGCCATAGAAACCAAACCTGCTTCTGAATGCTTTAATAA 72299 ||| | || |||||| || |||||||| || | ||| |||| ||| ||| |||||| | Sbjct 48325 ATTCGTATTAGGACCAGAATTAGCCATTGACAACAATCCTGGTTCATCATGTTTTAATTA 48266 Query 72300 GAAATTCTCATCTTCAAAAGTTTCTCCATATATACT 72335 ||||| ||||||||||| | |||||||||||||| Sbjct 48265 AAAATTTTCATCTTCAAACTTATCTCCATATATACT 48230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186800984907697