Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 3e-14 seq39 86.0 4e-12 >seq2 Length=701642 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | | ||||||||||| || ||| |||||||| || ||||| || ||| Sbjct 527906 CCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAG 527847 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | | || || |||| ||||||||| || || | | | | ||| | || Sbjct 527846 AGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGG 527787 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||||||||| ||||| | || ||| || | ||||| || ||| || Sbjct 527786 ATTCCTTCTTTGTCTTAGATTTT-AGCTTTGACAGCATCAATTGTGTCTGATGGTTCAAC 527728 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| ||||| || || || || ||||| | ||| Sbjct 527727 ATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACAT 527680 >seq39 Length=303829 Score = 86.0 bits (94), Expect = 4e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| ||||| || | | || || || || || || |||| || |||||||| | Sbjct 63079 CACCTCCTCTTAATCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTG 63020 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || || | | |||| || | ||||||||| |||||||| | | | ||||| | | Sbjct 63019 AAAGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGG 62960 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || || ||| || | |||||| | ||| Sbjct 62959 GAATGCCTTCCTTGTCCTAAATCTT-TGCTTTAACTGCATCGATGGTGTCAGAAGGTTCG 62901 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || |||| ||||| || ||||||||||| ||||| ||||| || | |||| Sbjct 62900 ACATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACAAAAATTTACATA 62850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328700887275840