Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2 122 2e-22 >seq2 Length=701642 Score = 122 bits (134), Expect = 2e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 ||||||||||| |||||| | || || ||| || |||||| | || |||| ||||| Sbjct 528426 ACAGGAAAAACCATCACTCTTGATGTTGAACCATCAGACACAATTGATGCAGTCAAAGCT 528485 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| || ||||| ||||||||||| || || |||||||||||||||||||||| Sbjct 528486 AAA-ATCCAAGATAAAGAAGGAATCCCACCCGATTAATAAAGACTTATCTTCGCCGGAAA 528544 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 | || ||||||||||| || | | || ||||| | || ||||| || || || || Sbjct 528545 ATAATTAGAAGATGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCAACACTCCA 528604 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | | || ||||||||| || Sbjct 528605 CTTAGTATTGAGACTTAGA 528623 Score = 113 bits (124), Expect = 1e-19 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 ||||||||||| |||||| | || || ||| || |||||| | || | || ||||| Sbjct 527704 ACAGGAAAAACCATCACTCTTGATGTTGAACCATCAGACACAATTGATGCTGTCAAAGCT 527763 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| || |||| ||||||||||| || || |||||||||||||||||||||| Sbjct 527764 AAA-ATCTAAGACAAAGAAGGAATCCCACCCGATTAATAAAGACTTATCTTCGCCGGAAA 527822 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 | || ||||||||||| || | | || ||||| | || ||||| || || ||||| Sbjct 527823 ATAATTAGAAGATGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCCACACTTCA 527882 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | || ||||||||| || Sbjct 527883 TTTGGTGTTGAGACTTAGA 527901 Score = 109 bits (120), Expect = 1e-18 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 ||||||||||| |||||| | || || ||| || |||||| | || |||| ||||| Sbjct 527476 ACAGGAAAAACCATCACTCTTGATGTTGAACCATCAGACACAATTGATGCAGTCAAAGCT 527535 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| || ||||| ||||||||||| || || |||||||||| ||||| ||||| Sbjct 527536 AAA-ATCCAAGATAAAGAAGGAATCCCACCCGATTAATAAAGACTTATTTTCGCTGGAAA 527594 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 | || ||||| ||||| || | | || ||||| | || ||||| || || || || Sbjct 527595 ATAATTAGAAGACGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCAACACTCCA 527654 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | | || ||||||||| || Sbjct 527655 CTTAGTATTGAGACTTAGA 527673 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT-AAAGCA 206252 || || || || |||||| | || || || || |||||| | || | || ||||| Sbjct 528654 ACTGGTAAGACCATCACTCTTGACGTT-AACCATCAGACACAATTGATGCTGTCAAAGCT 528712 Query 206253 AAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAA 206312 ||| || |||| ||||||||||| || || |||||||||||||||||||||| Sbjct 528713 AAA-ATCTAAGACAAAGAAGGAATCCCACCCGATTAATAAAGACTTATCTTCGCCGGAAA 528771 Query 206313 GCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCA 206372 | || ||||||||||| || | | || ||||| | || ||||| || || || || Sbjct 528772 ATAATTAGAAGATGGAAGAACACTCTCAGACTACAATATTCAAAAAGAATCAACACTCCA 528831 Query 206373 CCTTGTTTTGAGACTTCGA 206391 | | || ||||||||| || Sbjct 528832 CTTAGTATTGAGACTTAGA 528850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181809034604617