Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 1e-12 >seq2 Length=701642 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 106255 TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAAC 106314 |||| ||||||||||| || || ||||| || || || ||||| || | || |||| Sbjct 528397 TAAATATGCAAATTTTCGTAAAGACATTAACAGGAAAAACCATCACTCTTGATGTTGAAC 528456 Query 106315 CCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 | || | ||| ||| ||| ||||| || |||||||| | || | Sbjct 528457 CATCAGACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCG 528516 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 || || |||| ||||| | || || ||| ||||||||||| | ||| | || | Sbjct 528517 ATTAATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACT 528576 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 |||| || ||||||||||| ||||| || ||||||||||| | |||| ||| Sbjct 528577 ACAATATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGA 528629 Score = 86.0 bits (94), Expect = 5e-12 Identities = 162/237 (68%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 106259 AATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGG 106318 |||| |||| || || || ||||||||||| |||||||| || | || |||| Sbjct 528629 AATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGACGTT-AACCATC 528687 Query 106319 CGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCA 106378 || | ||| || ||| ||||| ||||||||||| | || ||| | Sbjct 528688 AGACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTA 528747 Query 106379 ACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAA 106438 | |||| ||||| | || || ||| ||||||||||| | ||| | || ||||| Sbjct 528748 ATAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAA 528807 Query 106439 CATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGATAATGATA 106495 || ||||||||||| ||||| || ||||||||||| | |||| ||| | ||||| Sbjct 528808 TATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGAAACTGATA 528864 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||| ||||||| || || |||||||| || || ||||| || | || ||||| Sbjct 527452 ATGTAAATTTTCGTAAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 527511 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 || | ||| ||| ||| ||||| || |||||||| | || ||| || Sbjct 527512 GACACAATTGATGCAGTCAAAGCTAAAATCCAAGATAAAGAAGGAATCCCACCCGATTAA 527571 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||| ||||||| || || ||| |||||||||| | ||| | || ||||| Sbjct 527572 TAAAGACTTATTTTCGCTGGAAAATAATTAGAAGACGGAAGAACACTCTCAGACTACAAT 527631 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGGA 106487 || ||||||||||| ||||| || ||||||||||| | |||| ||| Sbjct 527632 ATTCAAAAAGAATCAACACTCCACTTAGTATTGAGACTTAGAGGTGGA 527679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402325790064416