Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq2 125 7e-24 seq39 113 5e-20 seq6 98.7 1e-15 >seq2 Length=701642 Score = 125 bits (138), Expect = 7e-24 Identities = 173/238 (73%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| ||||| |||| ||| || | ||| || || ||||| |||||||| |||||||| | Sbjct 528630 TTCCACCTCTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTG 528571 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | | | | | || || | | ||| || || || || | | | | |||||| Sbjct 528570 AGAGTGTTCTTCCA-TCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGT 528512 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || || |||||||| ||||| ||||| |||||| || || | |||||| || | ||| Sbjct 528511 GGGATTCCTTCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCA 528452 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT-TTTGTTT 134720 || || ||||| |||||||| || ||||| || || |||||||||||||| ||| ||| Sbjct 528451 ACATCAAGAGTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATTTATTT 528394 >seq39 Length=303829 Score = 113 bits (124), Expect = 5e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 |||||||| | || | || | ||| || || |||||||||| || ||||| || | Sbjct 63077 CCTCCTCTTAATCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAA 63018 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || ||| || || ||||| ||||||||||| | | | |||||||| || Sbjct 63017 AGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGA 62958 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || | ||| ||| ||| || || || | ||||| || | ||| || Sbjct 62957 ATGCCTTCCTTGTCCTAAATCTTTGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGACA 62898 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 || || || || || ||||| ||||| |||||||| ||||||| ||| | |||| Sbjct 62897 TCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAACAAAAATTTACATAATATTTT 62843 >seq6 Length=529034 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| | || | || | ||| || || |||||||||||||| |||||||| Sbjct 10643 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 10702 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || ||| || | | || || |||||||| | | | |||||||| || Sbjct 10703 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 10762 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||| |||||| |||||| || || | || || || | ||| || Sbjct 10763 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 10822 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || | || ||||||||||||| |||| Sbjct 10823 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 10871 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| | || | || | ||| || || |||||||||||||| |||||||| Sbjct 11625 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 11684 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || ||| || | | || || |||||||| | | | |||||||| || Sbjct 11685 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 11744 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||| |||||| |||||| || || | || || || | ||| || Sbjct 11745 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 11804 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || | || ||||||||||||| |||| Sbjct 11805 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 11853 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 134486 TCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 ||| ||||| | || | || | ||| || || |||||||||||||| |||||||| Sbjct 14405 TCCACCTCTCAATCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGA 14464 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | || ||| || | | || || |||||||| | | | |||||||| || Sbjct 14465 GAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGG 14524 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || ||||| || |||| |||||| |||||| || || | || || || | ||| || Sbjct 14525 GATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAAC 14584 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| || ||||| || || | || ||||||||||||| |||| Sbjct 14585 ATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAACGAAAATTTACATT 14633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505393491318040