Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq56 396 4e-105 seq10 277 2e-69 >seq56 Length=254943 Score = 396 bits (438), Expect = 4e-105 Identities = 1093/1644 (66%), Gaps = 55/1644 (3%) Strand=Plus/Minus Query 68480 TTGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTG 68539 |||| ||||| ||||||||||| | |||| ||| | ||| ||||| | | | || | Sbjct 217737 TTGGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATA 217678 Query 68540 CCGCCATTTTTATAATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGA 68599 | || | |||| ||| |||| | ||| ||||||| ||||| | | ||| | Sbjct 217677 CAGCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTA 217618 Query 68600 TATCATCTGGAAGGC--TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCT 68656 ||| ||||| | || |||||| || || ||| || || || | | |||| | Sbjct 217617 TATTTTCTGGTATTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 68657 TGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTA 68716 |||| || |||| | ||| || ||| | | || | ||| ||||||| Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAATAC 217498 Query 68717 TTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAG 68776 ||||| |||| || ||||| | |||||||| ||| | ||||||||||| | | Sbjct 217497 AAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAGG 217438 Query 68777 ATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAAC 68836 ||||||||||| | ||||| | ||||||||||| ||||||||||||| | ||| Sbjct 217437 ATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAATG 217378 Query 68837 TATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGAT-CA 68895 |||||| | |||||| | || || || | ||| | | | |||||||| || || Sbjct 217377 AATTTCTCATTCCATGTTTGATTATATTTTATTTCA-AGG-----AATCCCAATCATACA 217324 Query 68896 --GATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCAT 68953 |||||| |||||||| | ||| ||| || || || | ||| ||| | Sbjct 217323 TTGATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACTTCCTT 217264 Query 68954 TATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTA-ATGCACCG 69012 | ||||||||||||| || || |||||| |||| || | | | ||| || Sbjct 217263 AAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATCCA 217205 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTA--TCGAATG 69070 ||||||||||| || ||||| | | ||| | |||| |||| | ||||| | Sbjct 217204 TAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGC--CTAGTCAGATTCGAAAG 217147 Query 69071 GATAATGTAAAAGAATA-AATGCATCTGCCAATCCCTGAAC-CCCAATACCGATAGGTCT 69128 | || | | | | |||||||| || ||||| | ||| |||||| || || ||||| Sbjct 217146 G-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAAT-CCAATTGGTCT 217089 Query 69129 ATGTCTCTTATT--TGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATT 69186 |||| | ||||| || ||| | |||| | | ||||||| |||||| |||||||| | Sbjct 217088 ATGTTTTTTATTGCTGTACTCT--GCTTATTTCACAGGATAAAAATTAAGATCTATAACT 217031 Query 69187 TTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 ||| ||||| | || |||| | ||| || ||| | ||||||||| | Sbjct 217030 AAATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTT 216971 Query 69247 CCATCTATA---ACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCA 69303 | |||| | |||||| | | || || | |||| ||| || || |||| |||| Sbjct 216970 CTATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCA 216911 Query 69304 TTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGA 69363 | || | || |||||| || || || ||||||| |||||||| ||| || || || | | Sbjct 216910 TCAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAA 216851 Query 69364 TTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTT 69423 || | |||||||| |||| ||||| || || ||||| | ||| | || |||||| Sbjct 216850 TTCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTT 216791 Query 69424 TCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAA 69483 || | | || || || || ||| | | ||||| || ||| | ||| | Sbjct 216790 GATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATT--GTACTTCTTC 216733 Query 69484 CGCTTCTCTTTT--TCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCAT 69541 | || | |||| |||||| | ||||| | ||| || ||||| || ||| | Sbjct 216732 CCATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTT 216673 Query 69542 CCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTT 69601 | || |||||||||||||| ||||| | | ||| | |||| || ||||||| || Sbjct 216672 AAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTT 216613 Query 69602 TCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCAT 69661 |||||||| ||| |||||||| | ||| ||| | |||||| || || | ||||||| Sbjct 216612 ACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAA 216553 Query 69662 TTCCTGTAttttt------tttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 69715 |||| ||| || || |||| ||||||||| || ||| |||||| |||| Sbjct 216552 TTCCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTT 216499 Query 69716 CTAGATATATCGC-CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 | | |||| || |||| || || ||| ||||| | ||| | ||||||||| Sbjct 216498 CCAAGTATACGGCAAATGA-ACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCA 216440 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 || | |||| | ||| | ||||| || | | |||||| | |||||||||||||| | Sbjct 216439 GTATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGA 216380 Query 69835 ATATAACTTCCTCTTGCG--CGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTT 69892 |||||||| |||| || | ||| ||| ||| | |||||||| || || || Sbjct 216379 ATATAACT--ATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATT 216322 Query 69893 TAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCA 69952 || || |||||||| | ||| ||||| ||||| || || ||||| |||||||| || Sbjct 216321 TACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCA 216262 Query 69953 TGTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGT-TCCCGC-ATTAAATAATGT 70010 | | | || ||||| |||||||| ||| | || || | || | ||| |||||||| Sbjct 216261 TATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGT 216204 Query 70011 AGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTC 70070 |||| || ||||| || |||||| || | || || || || | | |||||||| Sbjct 216203 TGGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTG 216144 Query 70071 TATATCCCACTGATGAATTCCTAT 70094 | ||| || ||||||||| || Sbjct 216143 AAGATCATGCTTATGAATTCCAAT 216120 >seq10 Length=460275 Score = 277 bits (306), Expect = 2e-69 Identities = 614/918 (67%), Gaps = 40/918 (4%) Strand=Plus/Plus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||||| ||| ||||| || | | | ||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| | || || ||||| | |||| | | ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 | |||||| ||||||||||| |||||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || ||||||| || || | | || || ||||| || | || || || || || Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 39565 CG-ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGA 39623 ||| | | | || || || | | ||| || | | ||| || || | Sbjct 101121 TTCATGG-ATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAA 101179 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | ||| ||||| || |||||||| || ||||| || || ||||| ||||| |||| Sbjct 101180 AATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCA 101239 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 | || | |||||||| |||||| |||||| |||||| ||||| ||||||||||||| Sbjct 101240 TAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTT 101299 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACT 39800 | || || || || |||| ||||| || | | || |||||||| ||||| | Sbjct 101300 CAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAA---TGAATCATTATCATTGATCCATT 101356 Query 39801 TCTGTGCCCAATCAGCTTTCTTCT---TTACACAAGGCATTGTTTCTATAGCATTAAAGA 39857 || |||||| || ||||| | ||||| |||| | || || |||| | | Sbjct 101357 TCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATGGAGTA 101413 Query 39858 GATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTG 39917 |||| |||||||| ||| | | || ||||| || || ||| ||| |||| | Sbjct 101414 AGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAG 101473 Query 39918 AATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTA 39977 |||| || ||||| || || || | |||||| || |||||||| ||||| | |||||| | Sbjct 101474 AATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAA 101533 Query 39978 CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAA 40037 | |||| ||| ||| || || || || ||||| || ||||||||||| || ||||| | Sbjct 101534 CTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGA 101593 Query 40038 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGA 40097 | |||||||||| ||||||||| | ||||| || | | ||||| | ||| || || | Sbjct 101594 AAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATCTTTAA 101653 Query 40098 TATC-----------------TTTT-------GATATATCTACTTCTTCAGCTGTCCAAA 40133 ||| |||| | | ||| | ||| ||||| ||||||| Sbjct 101654 GATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGTCCAAA 101713 Query 40134 ACGACGCCTCTGCCTT-TTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATA 40192 | |||| || || ||||||||| ||||| |||||| || | ||||| || | | Sbjct 101714 AGCTAGCCT-TGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAACAGA 101772 Query 40193 ACAAATCTATTTGGATTT 40210 ||||| |||||||||||| Sbjct 101773 ACAAACCTATTTGGATTT 101790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686902128398280