Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq10 253 2e-62 seq5 150 1e-31 >seq10 Length=460275 Score = 253 bits (280), Expect = 2e-62 Identities = 646/973 (66%), Gaps = 40/973 (4%) Strand=Plus/Minus Query 43687 AAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAA 43746 |||||| ||||||||| |||| |||||| | || |||| || ||| | |||||||| Sbjct 101790 AAATCCAAATAGGTTTGTTCTGTTCCCAATTAAGTACAATGATATCTGGAATATGTACAA 101731 Query 43747 AAAAGCACA-GGCGTCATTTTGGACAGCAGAAGAAGTTGAT-----TTGACTAAAGACTT 43800 | || |||| ||| |||||||| || || ||| ||||| || | |||| | || Sbjct 101730 ATAA-CACAAGGCTAGCTTTTGGACTGCTGAGGAAATTGATCTTTATTAAGTAAAAATTT 101672 Query 43801 ------------AGCACATTG--GATTGC-----ATTAAAACCACAAGAAAAACATTTTA 43841 || | || ||||| |||||| || ||||||| || |||| Sbjct 101671 TAGTTAAATTCTAGGATCTTAAAGATTGGGAAAAATTAAAGTCAGAAGAAAAGCACTTTA 101612 Query 43842 TATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTA 43901 | | || ||||| || |||||||| || || || || |||||||| || || | Sbjct 101611 TTAAATATGTATTGGCTTTCTTTGCTGCCAGTGATGGAATTGTCAATGAGAACTTAGCAT 101552 Query 43902 GTCGGTT-TGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATT 43960 | || || || ||||||||| | |||||||| ||||||| ||||| ||| ||||| Sbjct 101551 AACAATTCTGTACA-GAAGTTCAAATTCCAGAAGCCAGATGTTTCTATGGATTTTAAATT 101493 Query 43961 GCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||||| |||||||| ||||| |||| || ||| |||| ||||| ||||||| ||| Sbjct 101492 GCCATGGAAAATATACATTCTGAAACATATTCTCTCTTGATTGATACTTACATCACTGAT 101433 Query 44021 GGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAA 44080 | | || || || || | |||| || || | || |||| ||| || | || Sbjct 101432 GAAAATGAAAAAAATTACTTACTCCATGCCATTGACAATGTGCCTGTAATTCAAAAGAAG 101373 Query 44081 GCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCG 44140 ||| ||||| | |||||||| ||| |||||||| |||| ||| |||| | || Sbjct 101372 GCATCATGGGCAATGAAATGGATCAATGATAATGATTCATTTGCTGAAAGACTAATTGCT 101313 Query 44141 TTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAG 44200 || || | ||| |||||||| ||||| || || || ||| ||||| |||||| | || Sbjct 101312 TTCGCTGCTGTTGAAGGCATCTTCTTCTCTGGTTCTTTTTGTGCCATTTTTTGGATCAAA 101253 Query 44201 AAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGC 44260 || || | ||||| || | || || || ||||| || ||| | |||||||| Sbjct 101252 AAGAGATCACTTATGCCAGGACTAACATTCTCCAATGAATTGATATCAAGAGATGAAGGA 101193 Query 44261 TTACATTGCGATTTTGCTTGCTT--GTTACTTGGATATCTAGGAGACGATAAGCCTTCAT 44318 |||||| ||||||||||| || ||| | |||| | | |||| | || Sbjct 101192 TTACATACTGATTTTGCTTGTTTACTCTACAAGCATAT-----GGTCAATAAACTATCCA 101138 Query 44319 GTAAGACAATTACAGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAA 44378 | | | ||| || ||| || | || || || ||| | ||||| || | Sbjct 101137 ATCAAAGAATCCATGAAATTATTTCATCTGCTGTTGCTATTGAAAAGGAATTCATTAGTG 101078 Query 44379 CAGCATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAAT 44438 ||||||||| ||| | ||||| ||||||||| | | ||||| ||||| ||||||| Sbjct 101077 AAGCATTACCAGTAGAATTAATTGGAATGAATTCAACACTCATGAAACAATACATTGAAT 101018 Query 44439 ACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTAT-ATTGTACAAAAC 44497 |||| ||| | || |||| | || || ||| ||| | | | | ||| | || Sbjct 101017 TTGTTGCTGATAGACTAATTTTCGCTCTTGG-TGCTCCAAAGATTTTCAATGTGAAGAAT 100959 Query 44498 CCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGC 44557 || || || | ||||| | ||||| | |||| ||||| ||||| || |||| | | Sbjct 100958 CCTTTCGAGTGGATGGATATGATTTCCCTCTAAGGAAAAACCAACTTCTTCGAAAGAAGA 100899 Query 44558 GTTGGAGAATATCAGCGAATGGGCGTCATGA-TAACAAGT--GACAATAAATTTACTACG 44614 || || || || | | || ||||||| ||| || | || || |||||||| | Sbjct 100898 GTAGGTGATTACTAAAAAGCTGGTGTCATGAGTAAAAAATAGGATAAAGTATTTACTATG 100839 Query 44615 GATGAAGATTTCT 44627 |||| |||||||| Sbjct 100838 GATGCAGATTTCT 100826 >seq5 Length=531512 Score = 150 bits (166), Expect = 1e-31 Identities = 389/591 (66%), Gaps = 10/591 (2%) Strand=Plus/Plus Query 19322 AACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAA 19381 || ||| ||| ||||||||| || | || | ||||| ||||| ||| || | Sbjct 504035 AAAAATATGGAATTAAACATGTAAAGGGTATGTTATTATATGGACCACCTGGTACAGGTA 504094 Query 19382 AAACATTAATTGCGAGAGAACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAA 19441 ||||| | || || ||| || | |||| || | | | | | || ||||| || | Sbjct 504095 AAACACTTATAGCAAGATAATTGGCTAAAGTATTAAGAGCTAAGGCACCTAAAATCGTTA 504154 Query 19442 ATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGT 19501 |||| || ||||| || | ||||| ||| || || | ||||||||||| || || | Sbjct 504155 ATGGACCAGAAATATTTAGTAAATTTGTTGGAGAAGCTGAAGAAAATGTTAGAAAATTAT 504214 Query 19502 TTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCA--AAAGTTCTTTGCACATTAT 19559 ||||||| ||| | ||| || || | | || | | ||||| || || ||||| Sbjct 504215 TTGCTGAAGCTATTGCAGATTAAGAA--TCAAAGGGGGATGAAAGTGAATTACATATTAT 504272 Query 19560 AATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC------TGGTGTAAATGG 19613 | || | |||||| |||| ||||| ||||| |||||||||| | || || || Sbjct 504273 AGTATTTGATGAAATGGATGCAATTTGTAAATAAAGAGGTTCTATTAATTCTGGAACAGG 504332 Query 19614 AGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTGAA 19673 || | |||| | |||||| ||| || | | |||| | || ||||||||| | || Sbjct 504333 AGCATATGATAATGTTGTAAATTAATTGTTATCAATGATTGATGGTGTTAACTCTTTAAA 504392 Query 19674 TAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTACG 19733 ||||||| | ||||| || ||||| |||||| || ||||| || || |||| | Sbjct 504393 TAATATTCTTGTTATAGGAATGACAAATAGAAAAGATTTAATTGATGAAGCAGTATTGAG 504452 Query 19734 ACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGTGGACGTGTGGA 19793 ||| || | || ||| | | || ||| | | || ||||| |||| | | Sbjct 504453 ACCTGGAAGATTTGAAGTTCATATTGAAGTGGGTCTTCCAGATGAGGCTGGAAGATAATA 504512 Query 19794 AATTTTAAACATACATACATCAACCATGCGACAAAATAACCTTTTAAATGACGATGTAGA 19853 ||| ||||| || ||||| || | || ||||| | ||| || | |||||| | Sbjct 504513 AATATTAAATATTCATACTGAAAATTTAAGAAAAAATGAAGCATTAGATAAAGATGTAAA 504572 Query 19854 TCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAACTTGA 19904 | |||||||| | ||| | ||| ||||| |||| || || ||| |||| Sbjct 504573 TTTAGAAGAATTGGCAACAATTACAAAAAATTATACAGGTGCTGAAATTGA 504623 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397452236215885