Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 5e-12 >seq2 Length=701642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 171/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGT 27093 |||||| || || | || || |||||||||||||||||||| | |||| | | | Sbjct 528614 CAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTT-CTTCCAT 528556 Query 27094 CTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTAT 27153 |||| | | ||| |||||| | || || | | || ||| || || | || ||||||| Sbjct 528555 CTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTCTTTAT 528496 Query 27154 CGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAG 27213 | ||| || ||| | | || | ||||||| | |||||| || ||||| || | Sbjct 528495 CTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGTGATGG 528436 Query 27214 ATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAA---AATTTATTAAACC 27270 ||| || || | || || || || ||||||||| | | || |||| |||||||| Sbjct 528435 TTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATTTATTTAATTTAATTAATTAAACC 528376 Query 27271 -TTATTATA 27278 |||||||| Sbjct 528375 ATTATTATA 528367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424930376004024