Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq10 136 5e-27 seq56 105 8e-18 >seq10 Length=460275 Score = 136 bits (150), Expect = 5e-27 Identities = 299/439 (68%), Gaps = 13/439 (3%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || ||||||| || || | |||||| ||||| ||| |||||||| || | ||| Sbjct 101194 CCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCATAAGTGATCTCTTT 101253 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| |||| || || || || || ||||||||||| || || ||| || || Sbjct 101254 TTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTTCAACAGCAGCGAAA 101313 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 |||| || | ||| || || || | || ||| | |||||||||||||||| Sbjct 101314 GCAATTAGTCTTTCAGCAAATGA---ATCATTATCATTGATCCATTTCATTGCCCATGAT 101370 Query 122857 GCCTTCTTCTCAA-TACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTTTTCAGA 122915 |||||||| | || |||| || ||| | | ||||| | | ||| | || |||||| Sbjct 101371 GCCTTCTTTTGAATTACA-GGCACATTGTCAATGGCATGGAGTAAGTAATTTTTTTCATT 101429 Query 122916 TCCATCCTTAATGTATTTGTCAATCAATTTTGAATATGTTTCGCCATGAACCATTTCATT 122975 | |||| | ||||| | |||||||| ||||||||||| ||| | |||| Sbjct 101430 TTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGTTTCAGAATGTATATTTTC--C 101487 Query 122976 ATGGCA--TTGATATGCGTAGAATGAGCGCGCTTCGCTTATCTGAACCTCATCCGCAAAA 123033 |||||| || | || | ||||| | | ||||| || ||||| || | || || Sbjct 101488 ATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAATTTGAACTTC-TGTACAGAA 101546 Query 123034 TTGTTATTGATA--TTCTCAAAAACAATTCCATCGGACCCAGCAAAGAATGCCAGGATGT 123091 |||||| || || |||||| ||||||||||| |||||||||| |||| | | Sbjct 101547 TTGTTA-TGCTAAGTTCTCATTGACAATTCCATCACTGGCAGCAAAGAAAGCCAATACAT 101605 Query 123092 ACTTTATGAATTTCTTTTC 123110 | || || || | |||||| Sbjct 101606 ATTTAATAAAGTGCTTTTC 101624 >seq56 Length=254943 Score = 105 bits (116), Expect = 8e-18 Identities = 231/340 (68%), Gaps = 17/340 (5%) Strand=Plus/Minus Query 111047 AATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAG---AC 111103 ||| |||| || | |||| ||||||||| ||||| ||||| ||| |||| || Sbjct 217129 AATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTCTATGTTTTTTATTGCTGTAC 217070 Query 111104 TTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTA 111163 | | || | | ||| | ||||||||||| || || ||| || ||||| | || Sbjct 217069 TCT-GCTTATT-TCA-CAGGATAAAAATTAAGATCTATAACTAAATTCAGATTAGTTGTG 217013 Query 111164 ACAATCTTTGTGATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACA 111223 | || || || ||||| | ||| || |||||||||| | | ||| ||||||| Sbjct 217012 ATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTCTA---TCTGGATTGACA 216956 Query 111224 TACTTTGGAAGGGCGATTGAT----GCCAAATTGCAAACAGCCGTCTCATCCTTATCTGT 111279 ||||| | ||| || || |||||||| ||||| ||||||| | ||| Sbjct 216955 AACTTTTACAA----ATTTATACTAGCTAAATTGCATACAGCTATCTCATCAGGAGATGT 216900 Query 111280 GTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTT 111339 || | | |||||| |||||||| || ||| ||||| || || ||||||||||| || Sbjct 216899 ATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAATTCTTTTGATT 216840 Query 111340 ACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGC 111379 ||| || | || || ||||| ||||| | ||| || ||| Sbjct 216839 ACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGC 216800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628025900239200