Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_028104.1 Length=73689 Score E Sequences producing significant alignments: (Bits) Value seq16 176 2e-39 >seq16 Length=396119 Score = 176 bits (194), Expect = 2e-39 Identities = 530/794 (67%), Gaps = 52/794 (7%) Strand=Plus/Minus Query 64838 TTCAAGTAATCAATGATTTCTAACGGATTATAACACATAATGTCAGT--ACTAAATCCTG 64895 ||||| || | || ||||| | |||| |||| | || | ||| || || |||| Sbjct 79077 TTCAATTATTAAACTATTTCAACTGGATCATAATTGCTTATATAAGTTGACCAA--CCTG 79020 Query 64896 TGCCAATACCCTTTGAGCCATTTATTAAAATCATCGGAATAATTGGTGCATAAAAGATAG 64955 | || || || | | ||||| | ||| ||| ||||||||||| ||||| | | Sbjct 79019 TTCCTATTCCTTCAGCTCCATTAACTAAGCACATTGGAATAATTGGAACATAATATTCTG 78960 Query 64956 GCTCAACAATGAGACCATCATCATCCAAATACTTCAA--AATGGCATCATCCTCTTTTGG 65013 | |||||||| ||||||||| || | ||||||||| |||| |||||||| | ||| Sbjct 78959 GTTCAACAATTTAACCATCATCTTCTATATACTTCAATGAATG--ATCATCCTACTCTGG 78902 Query 65014 AAATATAGAACGAGTTATTTTATTCAATTGAGTATAAATATATCTTTCGGATGCGTGGTC 65073 || || | ||||| ||| |||| ||| ||| ||||||||||| | ||||| || || Sbjct 78901 GAAGATGTATCGAGTAATTCTATTTAATGCTGTAGAAATATATCTTGCAGATGCATGATC 78842 Query 65074 TTGTCCA---GTTCGTCGTGTTCCAAACTGACCATTTGGCATTAATAAATTAATATTGTT 65130 | ||| | || | ||||| | ||| ||||| | || |||||||||||| || Sbjct 78841 CTTACCACCCATAGCTCTACTACCAAATTAACCTTTTGGTAATAGTAAATTAATATTATT 78782 Query 65131 TGAACCAATAAAATTCTGAGCCATTCCGATAATTGCTGCATTTA-AACT--CGCTTCACC 65187 ||| |||| |||||| |||||||| || |||| ||| | | | || | | || || Sbjct 78781 TGAGCCAACAAAATTTTGAGCCATCCCTATAA---CTGTACTAACAAGTGACATATCTCC 78725 Query 65188 GTGATGATATCCTGAATGTTCAGAGACATATCCACTAAATTGAGCAACTTTTATTTCCGT 65247 ||||||||| ||||||| || | | ||| |||| |||| | | |||||||| ||| Sbjct 78724 ATGATGATATGCTGAATGCTCTGCAATATAACCACCCAATTAAACTACTTTTATCTCCTA 78665 Query 65248 TGTTAAATTCTTTTTAAATGCAGAATACAATA-TTTTCCGTAAACTAATTTTCAATCCAT 65306 | | ||||| || || || |||||| |||| || || |||||| |||| Sbjct 78664 TTTCAAATTACGCTTGAAACAAGCGAACAATACCTTTCTCTATCCT-GGTTTCAAACCAT 78606 Query 65307 CCATTAAATTAGG--AATG--CTTCTG-TCACAATCATATTTTGAGAAATGTATGAATTC 65361 ||| | | | ||| | || || || | || |||| || || || || ||||| Sbjct 78605 CCA-TGATTGAGGGTATTGATCTAATGTTGTCAGCCATA----GAAAAGTGAATCAATTC 78551 Query 65362 TTTGTTAATAAATTCTTCATAT-GAAACACTCGTATTATCTGTATTCAAATAACTATCGC 65420 ||| | || ||| || | ||| || ||| | | || || || ||| ||| Sbjct 78550 TTTATGAACAAAATCATTGTATCTTAATTCTCTCTATGTATG-ATCCACATATAAATCAT 78492 Query 65421 GATTATATTTTTCTAACCATTCTTTTCTATCACTTG-AGCGTTTTTATTAAATATTAAAT 65479 ||||||||| | ||||||||| ||||| ||| ||| |||||||| || ||| | Sbjct 78491 GATTATATTATGCTAACCATTACTTTCTCTCATTTGCCTTCTTTTTATTGAAACATAAGT 78432 Query 65480 CAATGGTCTCATCACTTTCTTTGCCTGTATGTTCAAATC-CAACAATTTTCT-TTTGT-- 65535 |||| | |||||| |||| | || |||| ||| || || || | | ||| Sbjct 78431 CAATTGATTCATCA---TCTT---ATTCATTTTCATATCGGAATTATATTGTATGTGTTC 78378 Query 65536 --------TTAAAATATTCACGAAATT-CTTTTCCTGTGCTTGTTCCAAGACCTTTATAA 65586 ||||||||||| || || || | || |||||| |||||||| ||| Sbjct 78377 GGAGGTTCTTAAAATATTCCTATGCTTCCTAATCATCTG-ATGTTCCCAGACCTTTGTAA 78319 Query 65587 TATTTGATTTTCCA 65600 |||||||||||||| Sbjct 78318 TATTTGATTTTCCA 78305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 235677768184050