Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 109 6e-19 seq753 95.1 1e-14 seq760 86.0 7e-12 seq725 82.4 9e-11 >seq6 Length=529034 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| ||||| ||||| || || || || || || |||||||| ||||| || Sbjct 12081 AATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 12022 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 12021 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 11962 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 11961 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 11902 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 11901 TATTCAAAAGGAATCAACACTTCACTTAGT 11872 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| ||||| || || || || || || |||||||| ||||| || Sbjct 11098 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 11039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 11038 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 10979 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || ||||||||||| ||| || | || || | | || || | ||||| ||| Sbjct 10978 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 10919 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||||||||| || ||||| |||| Sbjct 10918 ATTCAAAAGGAATCAACACTTCACTTAGT 10890 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| ||||| || || || || || || |||||||| ||||| || Sbjct 12535 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 12476 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 12475 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 12416 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 | | || ||||||||||| ||| || | || || | | || || | ||||| ||| Sbjct 12415 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 12356 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | ||||||||||| || ||||| |||| Sbjct 12355 ATTCAAAAGGAATCAACACTTCACTTAGT 12327 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || ||||| || || || || || || |||||||| ||||| || Sbjct 10871 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 10812 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 10811 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 10752 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 10751 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 10692 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 10691 TATTCAAAAGGAATCAACACTTCACTTAGT 10662 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || ||||| || || || || || || |||||||| ||||| || Sbjct 11853 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 11794 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 11793 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 11734 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 11733 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 11674 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 11673 TATTCAAAAGGAATCAACACTTCACTTAGT 11644 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || ||||| || || || || || || |||||||| ||||| || Sbjct 14633 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 14574 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 14573 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 14514 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 14513 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 14454 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 14453 TATTCAAAAGGAATCAACACTTCACTTAGT 14424 Score = 100 bits (110), Expect = 3e-16 Identities = 149/210 (71%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||| |||| || || ||||| || || || || || || |||||||| ||||| || Sbjct 12308 AATGTAAATTTTCGTTAAGACACTCACTGGAAA-ACAATCACTCTTGATGTTGAACCATC 12250 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 12249 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 12190 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 12189 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 12130 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 12129 TATTCAAAAGGAATCAACACTTCACTTAGT 12100 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||| |||| ||||| ||||| || || || || || || |||||||| ||||| || Sbjct 14860 ATGTAAATATTTGTTAAGACACTCACTGGAAA-ACAATCACTCTTGATGTTGAACCATCA 14802 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| | || ||||||||| | |||||||| ||||| || || || || Sbjct 14801 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 14742 Query 27526 CAGCGTCTA-ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 | | || ||||||||||| ||| || | || || | | || || | ||||| || Sbjct 14741 TAAAGACTCTATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 14682 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | ||||||||||| || ||||| |||| Sbjct 14681 TATTCAAAAGGAATCAACACTTCACTTAGT 14652 >seq753 Length=230 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 || ||||| || || || || || || |||||||| ||||| || |||| |||| Sbjct 229 GTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCAGATACTATTGAT 170 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 | || ||||||||| | |||||||| ||||| || || || || | | || ||| Sbjct 169 GCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCATT 110 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||| || | || || | | || || | ||||| ||| | ||||||||| Sbjct 109 TTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAA 50 Query 27598 TCCACTCTTCATCTAGT 27614 || || ||||| |||| Sbjct 49 TCAACACTTCACTTAGT 33 >seq760 Length=219 Score = 86.0 bits (94), Expect = 7e-12 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || || || || |||||||| ||||| || |||| |||| | || ||| Sbjct 1 ACTGGAAAAACAATCACTCTTGATGTTGAACCATCAGATACTATTGATGCAGTCAAAGCT 60 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 |||||| | |||||||| ||||| || || || || | | || ||||||||||| ||| Sbjct 61 AAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCATTTTTGCTGGAAAG 120 Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609 || | || || | | || || | ||||| ||| | ||||||||||| || ||||| Sbjct 121 TAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAATCAACACTTCAC 180 Query 27610 CTAGT 27614 |||| Sbjct 181 TTAGT 185 >seq725 Length=304 Score = 82.4 bits (90), Expect = 9e-11 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACG-CTTACCGGCAAGACTATT-ACTCTTGAGGTTGAGTCAG 27463 ||| |||| || || | |||| || || || || || | | |||||||| ||||| || Sbjct 82 ATGTAAAT-TTCGT-ACGACGACTCACTGGGAAAACAAGTCACTCTTGATGTTGAACCAT 139 Query 27464 GTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACC 27523 |||| |||| | || ||||||||| | |||||||| ||||| || || || | Sbjct 140 CAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATC 199 Query 27524 AGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATA 27583 | | | || ||||||||||| ||| || | || || | | || || | ||||| | Sbjct 200 AATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACA 259 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || | ||||||||||| || ||||| |||| Sbjct 260 ATATTCAAAAGGAATCAACACTTCACTTAGT 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570304860860240