Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq2 84.2 1e-11 seq39 82.4 5e-11 >seq2 Length=701642 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||||||| | |||||||||||| || ||| || |||||||| || || ||||| Sbjct 527906 CCACCTCTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAG 527847 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||||| | ||||| | || ||| ||||| || || | | | || || || || Sbjct 527846 AGTGTTCTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGG 527787 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||| || |||||| ||| ||| | ||| || | |||||||||| || || Sbjct 527786 ATTCCTTCTTTGTCTTAGAT-TTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAAC 527728 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||| || || || || || || || || | ||| Sbjct 527727 ATCAAGAGTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACAT 527680 >seq39 Length=303829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34516 TCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||||| || || ||||||||||| |||| |||||||||||||||| || ||||| Sbjct 63041 TCCTTTTAGATATTGTAATCTGAAAGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAAA 62982 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAAC-GA 34634 || | | | ||| || || || | || |||||||| ||| |||| |||||| | Sbjct 62981 ATAAGTCTTTATTGATCGGGGGGAATGCCTTCCTTGTCCTAAATC-TTTGCTTTAACTGC 62923 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 || ||||| || || || | || || || ||||| ||||| ||||| || Sbjct 62922 ATCGATGGTGTCAGAAGGTTCGACATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAAC 62863 Query 34695 AAAAATCTGCAT 34706 |||||| | ||| Sbjct 62862 AAAAATTTACAT 62851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314726619609041