Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq2 105 6e-18 seq6 102 7e-17 seq753 91.5 1e-13 seq760 84.2 2e-11 seq725 84.2 2e-11 >seq2 Length=701642 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || |||| || || | || |||||||| || ||||| || Sbjct 527680 ATGTAAATCTTCGTCAAGACATTGACAGGAAAAACCATCACTCTTGATGTTGAACCATCA 527739 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| ||||| ||||||||||||| || ||||||||| || Sbjct 527740 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTAA 527799 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | |||||| ||| |||| ||||| | || | || || ||||| Sbjct 527800 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAAT 527859 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| || || || | |||||||| ||| Sbjct 527860 ATTCAAAAAGAATCCACACTTCATTTGGTGTTG 527892 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || |||| || ||| | || |||||||| || |||| || Sbjct 528630 ATGTAAATCTTCGTCAAGACATTGACTGGTAAGACCATCACTCTTGACGTT-AACCATCA 528688 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| |||||| ||||| ||||||||||||| || ||||||||| || Sbjct 528689 GACACAATTGATGCTGTCAAAGCTAAAATCTAAGACAAAGAAGGAATCCCACCCGATTAA 528748 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | |||||| ||| |||| ||||| | || | || || ||||| Sbjct 528749 TAAAGACTTATCTTCGCCGGAAAATAATTAGAAGATGGAAGAACACTCTCAGACTACAAT 528808 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTG 27200 |||||||| || || || | || || || ||| Sbjct 528809 ATTCAAAAAGAATCAACACTCCACTTAGTATTG 528841 >seq6 Length=529034 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| | |||||||| || || || || || || | || |||||||| || ||||| || Sbjct 11099 CATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 11040 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| |||||| |||||| ||||||| ||||| || ||||||||||| Sbjct 11039 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 10980 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 | | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 10979 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 10920 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || || ||| Sbjct 10919 TATTCAAAAGGAATCAACACTTCACTTAGTT 10889 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||| | |||||||| || || || || || || | || |||||||| || ||||| || Sbjct 12536 CATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 12477 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| |||||| |||||| ||||||| ||||| || ||||||||||| Sbjct 12476 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 12417 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 | | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 12416 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 12357 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || || ||| Sbjct 12356 TATTCAAAAGGAATCAACACTTCACTTAGTT 12326 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | |||||||| || || || || || || | || |||||||| || ||||| || Sbjct 12080 ATGTAAATATTTGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 12021 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || |||||||||||| Sbjct 12020 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 11961 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 11960 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 11901 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || || ||| Sbjct 11900 ATTCAAAAGGAATCAACACTTCACTTAGTT 11871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || || || || || | || |||||||| || ||||| || Sbjct 10870 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 10811 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || |||||||||||| Sbjct 10810 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 10751 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 10750 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 10691 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||||||||||| || || | || || ||| | | ||| | ||||| |||| Sbjct 10690 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG-ATAA 10640 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || || || || || | || |||||||| || ||||| || Sbjct 11852 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 11793 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || |||||||||||| Sbjct 11792 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 11733 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 11732 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 11673 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||||||||||| || || | || || ||| | | ||| | ||||| |||| Sbjct 11672 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG-ATAA 11622 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || || || || || | || |||||||| || ||||| || Sbjct 14632 ATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCA 14573 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || |||||||||||| Sbjct 14572 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 14513 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 14512 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 14453 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 ||||||||||| || || | || || ||| | | ||| | ||||| |||| Sbjct 14452 ATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG-ATAA 14402 Score = 93.3 bits (102), Expect = 4e-14 Identities = 174/252 (69%), Gaps = 3/252 (1%) Strand=Plus/Minus Query 26948 ATTTGTTAATA-AGAGCAATAAATTTTTTAATTTATACGCCATGCAGATATTTGTAAAAA 27006 |||| |||||| ||| || ||| |||| || | |||| | |||||||| || | Sbjct 14901 ATTTCTTAATAGAGAATTATTAATAAATTAAAATAGAAAACATGTAAATATTTGTTAAGA 14842 Query 27007 CTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCA 27066 | || || || || | || |||||||| || ||||| || || | ||||| |||| Sbjct 14841 CACTCACTGGAAAA-CAATCACTCTTGATGTTGAACCATCAGATACTATTGATGCAGTCA 14783 Query 27067 AACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCG-TTTAATATACGCC 27125 || |||||| ||||||| ||||| || |||||||||||| | | | || | || Sbjct 14782 AAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCTATTTTTGCT 14723 Query 27126 GGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACC 27185 || || |||| |||||| | || | || || ||||| ||||||||||| || || Sbjct 14722 GGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAATCAACA 14663 Query 27186 TTACATTTGGTT 27197 | || || ||| Sbjct 14662 CTTCACTTAGTT 14651 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||| | || || || || || || || || || | || |||||||| || ||||| || Sbjct 12307 ATGTAAATTTTCGTTAAGACACTCACTGGAAAA-CAATCACTCTTGATGTTGAACCATCA 12249 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| |||||| |||||| ||||||| ||||| || |||||||||||| Sbjct 12248 GATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAA 12189 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 | | | || | || || || |||| |||||| | || | || || ||||| Sbjct 12188 TAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAAT 12129 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 ||||||||||| || || | || || ||| Sbjct 12128 ATTCAAAAGGAATCAACACTTCACTTAGTT 12099 >seq753 Length=230 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 1/220 (0%) Strand=Plus/Minus Query 27000 GTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAG 27059 || || || || || || || | || |||||||| || ||||| || || | ||||| Sbjct 229 GTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATCAGATACTATTGAT 170 Query 27060 ATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATA 27119 |||||| |||||| ||||||| ||||| || |||||||||||| | | | || Sbjct 169 GCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCAATAAAGACTCATT 110 Query 27120 TACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAG 27179 | || || || |||| |||||| | || | || || ||||| ||||||||||| Sbjct 109 TTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAATATTCAAAAGGAA 50 Query 27180 TCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAA 27219 || || | || || ||| | | ||| | ||||| |||| Sbjct 49 TCAACACTTCACTTAGTTCTTAGATTGAGAGGTGG-ATAA 11 >seq760 Length=219 Score = 84.2 bits (92), Expect = 2e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 27024 ATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGAC 27083 || |||||||| || ||||| || || | ||||| |||||| |||||| ||||| Sbjct 13 ATCACTCTTGATGTTGAACCATCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGAC 72 Query 27084 AAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGAC 27143 || ||||| || |||||||||||| | | | || | || || || |||| |||||| Sbjct 73 AAGGAAGGAATCCCACCCGATCAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGAC 132 Query 27144 AGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 | || | || || ||||| ||||||||||| || || | || || ||| Sbjct 133 GGAAGAACACTCTCTGACTACAATATTCAAAAGGAATCAACACTTCACTTAGTT 186 >seq725 Length=304 Score = 84.2 bits (92), Expect = 2e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 27027 ACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAA 27086 |||||||| || ||||| || || | ||||| |||||| |||||| ||||||| Sbjct 121 ACTCTTGATGTTGAACCATCAGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAG 180 Query 27087 GAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGT 27146 ||||| || |||||||||||| | | | || | || || || |||| |||||| | Sbjct 181 GAAGGAATCCCACCCGATCAATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGA 240 Query 27147 TCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTT 27197 || | || || ||||| ||||||||||| || || | || || ||| Sbjct 241 AGAACACTCTCTGACTACAATATTCAAAAGGAATCAACACTTCACTTAGTT 291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434914175855040