Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq48 84.2 2e-11 >seq48 Length=276533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 208/314 (66%), Gaps = 4/314 (1%) Strand=Plus/Minus Query 126078 ATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGT 126137 || |||||| || || || | |||||||| | ||| | || ||||| | |||| Sbjct 43118 ATGTGATTGCTGTATATGTGAGTATCTCCAAGTACATGTACAAACTCACCAAGTCCAAGA 43059 Query 126138 CCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACA 126197 |||||| || || | | || || |||||||||||||| |||| ||||||||| || Sbjct 43058 TTACATTCCTTGGCTAGTAAATAAGTTAGTAAAGCATAACTGGCAACATTGAAAGGTACT 42999 Query 126198 CCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACG 126257 || || | |||| ||| | ||| | |||| |||| ||| | || Sbjct 42998 CCCAATCCAAAATCACATGATCTCTAATACATCATACAACTTAAACGACCATTAGACACA 42939 Query 126258 TAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATC--GATTTCAGTAGGAT 126315 ||||||| | ||| | || ||||| ||||||||||| |||| | || | ||||| Sbjct 42938 TAAAATTAAGACAATACATGACAAGGAGGTAATGCCAT--AATCTTTAAATCTGAAGGAT 42881 Query 126316 TCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTTAATTTGTTGTATAACTG 126375 |||| ||||| | | | | || | | |||||| |||||| || || || || Sbjct 42880 TCCAAGCTGATAAACAGATTCTTCTACTATCCGGATTGTTTTTAAGTTAGTGAATTACAT 42821 Query 126376 ATTTTAATTGATCG 126389 ||| ||||||||| Sbjct 42820 CTTTCAATTGATCG 42807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594530700839