Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq39 131 4e-25 seq2 109 1e-18 seq6 104 5e-17 seq753 93.3 1e-13 seq760 86.0 1e-11 >seq39 Length=303829 Score = 131 bits (144), Expect = 4e-25 Identities = 153/207 (74%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || |||| ||| || ||||| | ||| || ||||| Sbjct 63066 TCTAAGTACTAAGTGAAGGGTTGATTCCTTTTAGATATTGTAATCTGAAAGAGTTCTTCC 63007 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| || || || ||||| || ||||| | || ||| || || |||| |||||||| Sbjct 63006 GTCTTCAAGTTGTTTTCCTGCAAAAATAAGTCTTTATTGATCGGGGGGAATGCCTTCCTT 62947 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||||| |||||| ||| || |||||||||||||| ||| || || || ||||| Sbjct 62946 GTCCTAAATCTTTGCTTTAACTGCATCGATGGTGTCAGAAGGTTCGACATCAAGTGTGAT 62887 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||||| || || | || || ||||| Sbjct 62886 TGTCTTACCTGTTAAGGTTTTAACAAA 62860 >seq2 Length=701642 Score = 109 bits (120), Expect = 1e-18 Identities = 160/225 (71%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | ||| || || || |||||||| || || || || | || || || Sbjct 528620 AAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCT 528561 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| | | || || ||||||||||| | || || || || || | |||||| Sbjct 528560 TCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTC 528501 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 || || ||||| || ||| || || || ||||| || |||||| || ||||| Sbjct 528500 TTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGAGT 528441 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT-TTTAT 211119 ||| || ||||| || | |||||||| || | ||||| ||||| Sbjct 528440 GATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATTTAT 528396 Score = 104 bits (114), Expect = 5e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | ||||| ||||| |||||||| || || || || | || || || Sbjct 527898 AAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCT 527839 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| | | || || ||||||||||| | || || || || || | |||||| Sbjct 527838 TCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTC 527779 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| | ||| || ||| || || || ||||| || |||||| || ||||| Sbjct 527778 TTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGAGT 527719 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| || ||||| || | ||||| || || Sbjct 527718 GATGGTTTTTCCTGTCAATGTCTTGACGAA 527689 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/210 (70%), Gaps = 1/210 (0%) Strand=Plus/Minus Query 210896 AAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCT 210955 |||||| | || | ||| || || || |||||||| || || || || | || || || Sbjct 528847 AAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTTCT 528788 Query 210956 TCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTC 211015 ||||||||| | | || || ||||||||||| | || || || || || | |||||| Sbjct 528787 TCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCTTC 528728 Query 211016 CTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGT 211075 ||||| | ||| || ||| || || || ||||| || || ||| || ||||| Sbjct 528727 TTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTT-AACGTCAAGAGT 528669 Query 211076 GATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| || || | ||||| || || Sbjct 528668 GATGGTCTTACCAGTCAATGTCTTGACGAA 528639 >seq6 Length=529034 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 10883 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 10942 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 10943 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11002 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 11003 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 11062 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| ||||| Sbjct 11063 TGTTTTTCCAGTGAGTGTCTTAACAAA 11089 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 11865 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 11924 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 11925 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11984 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 11985 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12044 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| ||||| Sbjct 12045 TGTTTTTCCAGTGAGTGTCTTAACAAA 12071 Score = 104 bits (114), Expect = 5e-17 Identities = 147/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 12320 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 12379 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 12380 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 12439 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 12440 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12499 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| ||||| Sbjct 12500 TGTTTTTCCAGTGAGTGTCTTAACAAA 12526 Score = 98.7 bits (108), Expect = 2e-15 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 14645 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 14704 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATA-AGGCGTTGTTGGTCAGGAGGAACTCCTTCCT 211017 ||||| | | ||| || || || ||| || | || ||| || || || | |||||||| Sbjct 14705 GTCTTCTAATTACTTTCCAGCAAAAATAGAGTCTTTATTGATCGGGTGGGATTCCTTCCT 14764 Query 211018 TGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGA 211077 |||| | || || ||| || || || || || || |||||| || ||||||| Sbjct 14765 TGTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGA 14824 Query 211078 TCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 | || ||||| ||||| ||||| ||||| Sbjct 14825 TTGT-TTTCCAGTGAGTGTCTTAACAAA 14851 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 10655 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 10714 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 10715 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 10774 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 10775 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 10834 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| || || Sbjct 10835 TGTTTTTCCAGTGAGTGTCTTAACGAA 10861 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 11637 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 11696 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 11697 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11756 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 11757 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 11816 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| || || Sbjct 11817 TGTTTTTCCAGTGAGTGTCTTAACGAA 11843 Score = 95.1 bits (104), Expect = 3e-14 Identities = 146/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 12093 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 12152 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 12153 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 12212 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 12213 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12272 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| || || Sbjct 12273 TGT-TTTCCAGTGAGTGTCTTAACGAA 12298 Score = 95.1 bits (104), Expect = 3e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 14417 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 14476 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 14477 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 14536 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 14537 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 14596 Query 211079 CGTCTTTCCCGTGAGAGTCTTTACAAA 211105 || ||||| ||||| ||||| || || Sbjct 14597 TGTTTTTCCAGTGAGTGTCTTAACGAA 14623 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||| ||| || |||||||| ||||| || || | || |||||||||||| | | Sbjct 15471 TGAACAGTTGATTCTTTTTGAATGTTGTACTCAGAGAGAATCCTTCCATCTTATAATTAT 15530 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || |||||||| | || | |||||| || || |||||||||| | ||||| || Sbjct 15531 TTTCCTGCGAAAAGGAGTCTTTGTTGACATGGTGGTGTTCCTTCCTTGGCATGGATTTTA 15590 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 |||| || || | ||||| || |||||| || ||||| || || || || || Sbjct 15591 GGTTTGACTGAATCTACAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTCCCAGTA 15650 Query 211092 AGAGTCTTTACAAA 211105 || |||| ||||| Sbjct 15651 AGTGTCTGAACAAA 15664 >seq753 Length=230 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 ||| || || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 26 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 85 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 86 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 145 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 146 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 205 Query 211079 CGTCTTTCCCGTGAGAGTCTTTAC 211102 || ||||| ||||| ||||| || Sbjct 206 TGTTTTTCCAGTGAGTGTCTTAAC 229 >seq760 Length=219 Score = 86.0 bits (94), Expect = 1e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 210899 TCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCC 210958 |||||| || | |||||| || || || ||||| || || || || | || || ||||| Sbjct 192 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 133 Query 210959 ATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTT 211018 ||||| | | ||| || || || || || | || ||| || || || | ||||||||| Sbjct 132 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 73 Query 211019 GTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGAT 211078 ||| | || || ||| || || || || || || |||||| || |||||||| Sbjct 72 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 13 Query 211079 CGTCTTTCCCGT 211090 || ||||| || Sbjct 12 TGTTTTTCCAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159140460279605