Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 >seq6 Length=529034 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| || ||||| |||||||| |||||||| || ||||| | | Sbjct 10871 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 10812 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| | | ||| |||||| ||||| ||||| | || || ||||| Sbjct 10811 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 10752 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | | || ||||| || || || | ||||||| | | || | || ||||| Sbjct 10751 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 10692 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 || ||||| || || ||| | || |||||| | || ||| |||| |||| Sbjct 10691 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGAT 10642 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| || ||||| |||||||| |||||||| || ||||| | | Sbjct 11853 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 11794 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| | | ||| |||||| ||||| ||||| | || || ||||| Sbjct 11793 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 11734 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | | || ||||| || || || | ||||||| | | || | || ||||| Sbjct 11733 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 11674 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 || ||||| || || ||| | || |||||| | || ||| |||| |||| Sbjct 11673 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGAT 11624 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| || ||||| |||||||| |||||||| || ||||| | | Sbjct 14633 AATGTAAATTTTCGTTAAGACACTCACTGGAAAAACAATCACTCTTGATGTTGAACCATC 14574 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| | | ||| |||||| ||||| ||||| | || || ||||| Sbjct 14573 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 14514 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | | || ||||| || || || | ||||||| | | || | || ||||| Sbjct 14513 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 14454 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGAT 23839 || ||||| || || ||| | || |||||| | || ||| |||| |||| Sbjct 14453 TATTCAAAAGGAATCAACACTTCACTTAGTTCTTAGATTGAGAGGTGGAT 14404 Score = 107 bits (118), Expect = 1e-18 Identities = 162/229 (71%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||| | ||||||||||| || ||||| || ||||| |||||||| || ||||| | | Sbjct 12308 AATGTAAATTTTCGTTAAGACACTCACTGG-AAAACAATCACTCTTGATGTTGAACCATC 12250 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| | | ||| |||||| ||||| ||||| | || || ||||| Sbjct 12249 AGATACTATTGATGCAGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCCGATCA 12190 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 | | | | || ||||| || || || | ||||||| | | || | || ||||| Sbjct 12189 ATAAAGACTCATTTTTGCTGGAAAGTAATTAGAAGACGGAAGAACACTCTCTGACTACAA 12130 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || ||| | || |||||| |||| ||| |||||||| Sbjct 12129 TATTCAAAAGGAATCAACACTTCACTTAGTTCTAAGATTGAGAGGAGGA 12081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338006399154716