Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq10 246 3e-60 >seq10 Length=460275 Score = 246 bits (272), Expect = 3e-60 Identities = 624/944 (66%), Gaps = 35/944 (4%) Strand=Plus/Plus Query 4248 ACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAAC 4307 |||||| ||||| ||| || ||||| |||||||||| || ||||| |||| | Sbjct 100873 ACACCAGCTTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGG 100932 Query 4308 GAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCA-CACTTTAG 4366 ||||| | ||||| | || || ||||| | | ||| || ||| | ||| || Sbjct 100933 GAAATCATATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCA-AG 100991 Query 4367 AGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAAT 4426 ||| | || | || ||||| |||||||| || || || |||||||| | || || Sbjct 100992 AGCGAAAATTAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCAT 101051 Query 4427 TCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTC 4486 |||||||||| || |||| || | | | || || | ||| |||| || || Sbjct 101052 TCCAATTAATTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGA 101111 Query 4487 TGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCC--AAACAAT 4544 || || || || | ||| | | || ||| ||||||| || | ||| | | | | Sbjct 101112 TGAAATAATTTCATGGATTCTTTGATTGGATAGTTTATTGACCA--TATGCTTGTAGAGT 101169 Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 ||||| ||||||||| ||| || ||||| ||||| |||| ||| || || || ||| Sbjct 101170 AAACAAGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTT 101229 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 | ||| ||||| | ||||||||| | |||||| || || ||| || ||||| ||| Sbjct 101230 AGTCCTGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAG 101289 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || |||||||| || || || || || | || || | || || | || || Sbjct 101290 AAGATGCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGA---ATCATTATCA 101346 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 || |||||||| | |||||| || || || | || || | ||| || || Sbjct 101347 TTGATCCATTTCATTGCCCATGATGCCTTCTTTTGAATTACAGGCACATTGTCAATGGCA 101406 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | | ||| | | |||||||| | || || ||||| || || | || ||| Sbjct 101407 TGGAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATAT 101466 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||||||||||||||||| || ||||| | |||||| || || ||||| ||||||| Sbjct 101467 GTTTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGA 101526 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 | ||||||||| |||| ||| || | ||||||| || || || || || |||||||| Sbjct 101527 ATTTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCA 101586 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 ||||| || ||||| |||| ||||||| || ||| || | ||| | ||||| ||| Sbjct 101587 GCAAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAA 101646 Query 5025 T-----GGGGC--------------AAATCTTTAGTTAA-----ATCAACTTCTTCAACA 5060 | | | |||| |||| |||| ||||| ||| ||| || Sbjct 101647 TCTTTAAGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCA 101706 Query 5061 GTCCAAAA-CGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||||| | | ||| | || |||||||||| ||| |||||| |||| ||| || Sbjct 101707 GTCCAAAAGCTAGCCTTGTG-TTATTTGTACATATTCCAGATATCATTGTACTTAATTGG 101765 Query 5120 AAGTATGACAAATCTGTTGTCGTTAGGTGTAAGAAGCGGTTCTT 5163 | | ||||| || || || ||| | | || ||||||| Sbjct 101766 GAACAGAACAAACCTATTTGGATTTGGTTTCAAAATAGGTTCTT 101809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045555973741