Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq56 324 2e-83 seq10 289 4e-73 >seq56 Length=254943 Score = 324 bits (358), Expect = 2e-83 Identities = 1133/1746 (65%), Gaps = 57/1746 (3%) Strand=Plus/Minus Query 76890 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 76949 || ||||| ||||||||||| | || | ||| | ||| ||||| | | | || | Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 76950 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 77009 || | |||| ||| |||| | ||| ||||||| || ||| | | ||| ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 77010 TCATCTGGAAGGTTTG-----TATTTTGAATGGAACCACCATCTGATATAATTGTATTCT 77064 | ||||| | ||| |||||| || || ||| || ||| || | | |||| | Sbjct 217615 TTTTCTGGTA--TTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTT 217558 Query 77065 TTATATCATCATTCCACA-ATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACT 77123 | ||| || |||| | |||| | || ||| | | || | ||| ||||||| Sbjct 217557 TGATAGCAGGTGTCCAAAGATTTAAT-TCAATTAGATCCTCAACTAAATGGGGATTAATA 217499 Query 77124 ATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 77183 ||||| |||| ||| ||||| | |||||||| ||| | ||||||||||| | Sbjct 217498 CAAACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAG 217439 Query 77184 GATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAA 77243 |||||||| ||| ||||||| | || || ||||| ||||||||||||| | ||| Sbjct 217438 GATTCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAAT 217379 Query 77244 CTATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCT 77303 |||||| | |||||| | | || || | ||| | | | |||||| | | || | Sbjct 217378 GAATTTCTCATTCCATGTTTGATTATATTTTATTTCAAGGAATCCCAATC--ATACAT-T 217322 Query 77304 GAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT----TACTAGCATATGATCC 77359 || ||| |||| ||| | ||| ||| || || || | | || | | ||| Sbjct 217321 GATGGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT----TCC 217266 Query 77360 ATTATATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCC 77419 | | ||||||||||||| || ||| | |||||| |||| || | ||| ||| Sbjct 217265 TTAAAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAACGTAAACATGATCC 217206 Query 77420 GTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGG 77479 ||||||||||| || ||||| | | ||| | |||| | | || || || Sbjct 217205 ATAATAAATTGTCTCAAAAATTTGTTAATTTAATGAAAGTGCCTAGTCAGATTCGAAAGG 217146 Query 77480 ATAATGTAAAAGAATA-AAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTAT 77538 || | | | | || ||||| || ||||| | ||| || | ||||| ||||||| Sbjct 217145 -TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTCTAT 217087 Query 77539 GTCTCTTATTG--GAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTT 77596 || | |||||| | | | | |||| | | ||||||| |||||| ||||||| | Sbjct 217086 GTTTTTTATTGCTGTACTCT--GCTTATTTCACAGGATAAAAATTAAGATCTATAACTAA 217029 Query 77597 ATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCC 77656 ||| ||||| | | || |||| | ||| || ||||| ||||||||| ||| Sbjct 217028 ATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTCT 216969 Query 77657 ATCTATA---ACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATT 77713 |||| | |||||| | | |||| |||| |||| ||| || || |||| ||||| Sbjct 216968 ATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCATC 216909 Query 77714 AGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATT 77773 || | |||||| || || || ||||||| |||||||| ||| || || || | ||| Sbjct 216908 AGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAATT 216849 Query 77774 TTGTTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTC 77833 | ||| || || |||| ||| |||| || || || | ||| | || || ||| Sbjct 216848 CTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTGA 216789 Query 77834 AATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTATCG 77893 || | || || || || || ||| | ||||||| || || || | | || Sbjct 216788 TATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCT---TCC 216732 Query 77894 CCTCTCTCTTT---CATATTGAGTA-TATAGCCGTTCAAATTCATCTCCCCAAACATCAT 77949 | | | | ||| ||||| || || |||| | || || ||||| || ||| | Sbjct 216731 CATTTTTTTTTATTCATAT-GATTAATATAATTTATTGAACTCTTCTCCATAACAATCTT 216673 Query 77950 CCAATCCAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTT 78009 | || || ||||||||||||||||| | | ||| || ||||||| ||||||| || Sbjct 216672 AAAGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTT 216613 Query 78010 TCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCAT 78069 |||||| | |||||| ||||||| | | ||||| ||||| || || | ||||||| Sbjct 216612 ACATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAA 216553 Query 78070 TTCCTGTATTCTT------TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTT 78123 |||| |||||| || |||| ||||||||| || ||| |||||| |||| Sbjct 216552 TTCCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTT 216499 Query 78124 CTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGG 78183 | | |||| || | || || ||| |||||| | ||| | ||||||||| | Sbjct 216498 CCAAGTATACGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCAG 216439 Query 78184 TGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAA 78243 | | |||| | ||| | | ||| || | | || ||| | | |||||||||||| || Sbjct 216438 TATCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGAA 216379 Query 78244 TATAACTTCCACTTGCG--CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTT 78301 ||||||| ||| || | ||| ||| || | |||||||| || || || Sbjct 216378 TATAACT--ATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTT 216321 Query 78302 AGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCAT 78361 | || ||||| || | ||| ||||| || || || || ||||| ||||| | ||| Sbjct 216320 ACTAATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCAT 216261 Query 78362 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAA--CAGTTCCTGCATTAAATAATGTC 78419 | | || ||||| |||||||| ||| ||| || || ||| |||||||| Sbjct 216260 ATCCAATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTT 216203 Query 78420 GGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAGCTGATTCT 78479 |||| ||||| ||||| |||||| || | | || || || | | |||||||| Sbjct 216202 GGAGTAGCATGAGTAAAGTATTTTTATGACATCAAATGATAAGTCTAGAAAGCTGATTGA 216143 Query 78480 ATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACC 78539 | || | ||||||||| | || | ||| | | || || |||||||||| Sbjct 216142 AGATCATGCTTATGAATTCCAATACTCACTCTCATTATTAATTGTTGGGGTCTTTCAATT 216083 Query 78540 GTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTG 78599 | || ||| | || | ||||| | |||| || || || || |||||| | | | Sbjct 216082 GGTTTCTTACCTTCCTTAAGTAAGTAACTTCTTTCTAATGTCTTGAATCCAAAAAAATCG 216023 Query 78600 TATGAA 78605 ||| || Sbjct 216022 TATTAA 216017 >seq10 Length=460275 Score = 289 bits (320), Expect = 4e-73 Identities = 634/945 (67%), Gaps = 60/945 (6%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||||| || ||||| || | | | ||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 47909 TTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAAT 47968 ||||| | || || ||||| |||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 47969 CAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAG 48028 |||||||| ||||| ||||| || ||| |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 48029 TTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCA--TCCACTATT 48086 || ||||||| || || ||| || || | ||| |||| |||||| | | || | Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 48087 ATCGATGTTACCGTTTCCTCACTTGG----TGGATACAACAAATGTTTAAACATTAAACA 48142 || ||| | ||| | |||| | || | || ||| || | | |||||| Sbjct 101121 TTC-ATG-----GATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACA 101174 Query 48143 TGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACC 48202 ||||||||| ||| | ||||||||||| || ||||| || || ||||| || || Sbjct 101175 AGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCC 101234 Query 48203 GGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATAT 48262 ||||| ||| | ||||||| |||||| || || ||||| ||||| ||||| || Sbjct 101235 TGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGAT 101294 Query 48263 GCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCT-----TCGTTGTGT 48317 |||||| || || || || || | ||||| || | || || | || ||| Sbjct 101295 GCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGC--AAATGAATCATTATCATTG--- 101349 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCT---TTACACAAGGCATTGTTTCTATAGCA 48374 ||||| |||||| |||||||| | ||||| |||| | || || ||| Sbjct 101350 ATCCATTTCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCA 101406 Query 48375 TTAAAGAGAAAGt---ttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTA 48431 | ||| |||| |||||||||| ||| | | ||||||||| || || ||| | Sbjct 101407 TG---GAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAA 101463 Query 48432 TACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCT 48491 || |||| || || |||||||| || || || | |||||| || |||||||| |||||| Sbjct 101464 TATGTTTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCT 101523 Query 48492 GTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTA 48551 | || || || || ||||| ||| ||| || || |||||||| || ||||||||||| Sbjct 101524 GGAATTTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTG 101583 Query 48552 GCAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTC 48611 |||||||| || || ||||||| ||||||||| | ||||| | || | | ||| | | Sbjct 101584 GCAGCAAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCC 101643 Query 48612 CAGTCATTGATATC-----------------TTTT-------GATATATCTACTTCTTCA 48647 || || || | ||| |||| | | ||| | ||| ||| Sbjct 101644 CAATCTTTAAGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCA 101703 Query 48648 GCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACTGTATTGGATT 48707 || |||||||| |||| || ||| ||||||||||| |||||| |||| | ||| Sbjct 101704 GCAGTCCAAAAGCTAGCCTTGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATT 101763 Query 48708 GGGAAAATAACAAATCTATTTGGATTT-TTTGCAAGGATAGGTTC 48751 ||||| | |||||| |||||||||||| || ||| |||||||| Sbjct 101764 GGGAACAGAACAAACCTATTTGGATTTGGTTTCAA-AATAGGTTC 101807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694662053029280