Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq56 334 1e-86 seq10 302 6e-77 >seq56 Length=254943 Score = 334 bits (370), Expect = 1e-86 Identities = 1038/1581 (66%), Gaps = 49/1581 (3%) Strand=Plus/Minus Query 75485 GGATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCC 75544 || ||||| ||||||||||| | || | ||| | ||| ||||| | | | || | Sbjct 217735 GGTTCGGCCATATGAATATTTAATGATTAACTCTAATCAATGAATGGTGCCCTGGATACA 217676 Query 75545 GCCATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 || | |||| ||| |||| | ||| ||||||| || ||| | | ||| ||| Sbjct 217675 GCTAGATTTAGAATTTATTTTTATGAAATCTCCCAAACTGTCTTGTATAAGGCTTTTATA 217616 Query 75605 TCATCTGGAAG---ATTTGTATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTG 75661 | ||||| | || |||||| || || || || || || | | |||| ||| Sbjct 217615 TTTTCTGGTATTTCATCAATATTTTAAACCGAGCCATTATTTGAGATTAATTTATTTTTG 217556 Query 75662 ATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATT 75721 || || |||| | ||| || ||| | | || | ||| ||||||| | Sbjct 217555 ATAGCAGGTGTCCAAAGATTTAATTCAATTAGATCCTCAACTAAATGGGGATTAATACAA 217496 Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||| |||| ||| ||||||| |||||||| ||| | ||||||||||| | ||| Sbjct 217495 ACGAATTCACCAGCCAAAACTCTTCTGGTGTAAATGTTAGTAGTATATGGTTCGAAGGAT 217436 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| ||| ||||||| | ||||| ||||| ||||||||||||| | ||| | Sbjct 217435 TCATTATTTTATAAAATTTAACTGGTTGATGCAGTAGGCATAGGTGCCAATAGTAATGAA 217376 Query 75842 TTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAT 75901 ||||| | |||||| | | || || | ||| | | | |||||| | | || |||| Sbjct 217375 TTTCTCATTCCATGTTTGATTATATTTTATTTCAAGGAATCCCAATC--ATACAT-TGAT 217319 Query 75902 GGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT----TGCTAGCATATGATCCATT 75957 ||| |||| ||| | ||| ||| || || || | |||| | | ||| | Sbjct 217318 GGTTTGACATTCCACATATCAAATTATAATATCCCCTATGATGCTGGACT----TCCTTA 217263 Query 75958 ATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTA-ACGCACCGT 76016 | ||||||| |||| || || | |||||| ||| || | | | | | || | Sbjct 217262 AAATGTTTCATAAGGGCCATCTCTAACAGCTAATTCATAAGAA-CGTAAACATGATCCAT 217204 Query 76017 AATAAATTGTTTCGAAAATCTTCTTA--TTAA-GATCTTGCGCT--TCAAGACTATCAAA 76071 |||||||||| || ||||| || ||| |||| || ||| || ||| || | | || Sbjct 217203 AATAAATTGTCTCAAAAAT-TTGTTAATTTAATGAAAGTGC-CTAGTCA-GATT--CGAA 217149 Query 76072 AGGATAATGTAAAAGAATA-AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTC 76130 ||| || | | | | |||||||| || | ||| | ||| || | ||||| |||| Sbjct 217148 AGG-TATTTTCATTCTTTGTAATGCATCAGCAAATCCTTAAACACCCAATCCAATTGGTC 217090 Query 76131 TATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTT 76190 ||||| | |||||| || |||| | | ||| ||| |||||| |||||||| | Sbjct 217089 TATGTTTTTTATTGCTGTACTCTGCTTATTTCACAGGATAAAAATTAAGATCTATAACTA 217030 Query 76191 TATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAATTTTC 76250 ||| ||||| | | || |||| | ||| || ||| | ||||||||| ||| Sbjct 217029 AATTCAGATTAGTTGTGATTATTTTAGTAATTTCCAATAATTTAACAAAATCAAAAGTTC 216970 Query 76251 CATCTA---TCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCAT 76307 |||| | |||||| | | | | |||| |||| ||| || || |||| ||||| Sbjct 216969 TATCTGGATTGACAAACTTTTACAAATTTATACTAGCTAAATTGCATACAGCTATCTCAT 216910 Query 76308 TAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGAT 76367 || | | |||||| || || || || |||| |||||||| || || ||||| | || Sbjct 216909 CAGGAGATGTATATTGAATAATTTCAGTACATAAATTACTACTTTTAATTGTTCCTAAAT 216850 Query 76368 TTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTT 76427 | | ||| || || |||| ||||||| || || || | | | | || ||||||| Sbjct 216849 TCTTTTGATTACTTTTTTAATTACATGCATCTTTGTATAACATATAAGGCAATCCAGTTG 216790 Query 76428 CAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATTATAGATTTGTATC 76487 || | || || || || || ||| | ||||||| || ||| || | | | | Sbjct 216789 ATATTTATGCATCTATTATTTCTTGCCATAATGCTCTAGCCTTCATTGTACTTCT-TCCC 216731 Query 76488 GCTTCTCTCT-TTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCC 76546 || | | | ||||||| | |||||| | || || ||||| || ||| | Sbjct 216730 ATTTTTTTTTATTCATATGATTAATATAATTTATTGAACTCTTCTCCATAACAATCTTAA 216671 Query 76547 AAACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTC 76606 | || ||||||||||| || ||||| | | ||| || ||||||| ||||| | || | Sbjct 216670 AGCCCTGGACATTCATTTGGGCACATAAGAGTCCAATCTGCATCTTCTTTAACTCTTTAC 216611 Query 76607 ATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTT 76666 ||||| | |||||| ||||||| | | ||||| ||||| || || ||||||| || Sbjct 216610 ATAAATAAATCAGGAATCCATAATCCTAAAAATAAATCTCTTGTCCTTTATTCTTCAATT 216551 Query 76667 CCTGTATTCTT------TTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCT 76720 || |||||| || |||| |||||||| || ||| |||||| ||||| Sbjct 216550 CCATGATTCTTACGTAATTAAAGA-----AAACTCCAT-ATGTCACTATGCCAAGGTTCC 216497 Query 76721 AGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTG 76780 | |||| || | ||| || ||| |||||| | ||| | |||||||||||| Sbjct 216496 AAGTATACGGCAAATGAACCTTTTCTCTTACCACCTCCTTAATCAACATATCTGGCAGTA 216437 Query 76781 TTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATA 76840 | |||| | ||| | | ||| || | | || ||| | |||||||||||||| |||| Sbjct 216436 TCATTAAATACTTTTAGCATAGGCACCAATCCATTACTTATACCATTTGTTCCACGAATA 216377 Query 76841 TAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAG 76900 ||||| | | | | ||| ||| ||| | |||||||| || || |||| Sbjct 216376 TAACTATCTTACGATCTAATTTTAGATATACTCAATCCTATTCCACCAGCTTATTTACTA 216317 Query 76901 ATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTA 76960 || |||||||| | ||| ||||| ||||| || || ||||| |||||| | ||| | Sbjct 216316 ATAAGAGCACATCTTTTTAATGTTTCATAAATTCCTTCTATTGAATCATCTACCATATCC 216257 Query 76961 AGAAGAAAACAGCTAGACATTTGATGATGAA--CAGTTCCTGCATTAAACAATGTAGGAG 77018 | || ||||| |||||||| ||| ||| || || ||| || ||||| |||| Sbjct 216256 AATAGGAAACATGAAGACATTT-ATG-GGAATGGTGTGCCACTATTGAATAATGTTGGAG 216199 Query 77019 ATGCATGAGTGAACCATTTTT 77039 |||||||| || |||||| Sbjct 216198 TAGCATGAGTAAAGTATTTTT 216178 >seq10 Length=460275 Score = 302 bits (334), Expect = 6e-77 Identities = 636/940 (68%), Gaps = 50/940 (5%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||||| ||| |||||||| | | | ||||| || || ||||| |||| | || || | Sbjct 100881 TTTTTAGTAATCACCTACTCTTCTTTCGAAGAAGTTGGTTTTTCCTTAGAGGGAAATCAT 100940 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| | || || ||||| | ||||| |||| ||| | || | | |||| Sbjct 100941 ATCCATCCACTCGAAAGGATTCTTCACATTGAAAATCTTTGGAGCACCAAGAGCGAAAAT 101000 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 |||||||| ||||| ||||| || || |||||| | | |||||||||| || | Sbjct 101001 TAGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAA 101060 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 || || |||| || || ||| || || | |||||||| |||||| || || || Sbjct 101061 TTCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAAT 101120 Query 46578 CG-ATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAA 46636 ||| | | ||| | | || || | || ||| || | | |||||| |||| Sbjct 101121 TTCATGG-ATTCTTTGATTGGATAGTTTATTGACCATATGCTTGTAGAGTAAACAAGCAA 101179 Query 46637 AATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCA 46696 ||||| ||| | ||||||||||| || ||||| || || ||||| || || |||| Sbjct 101180 AATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCCTGGCA 101239 Query 46697 TTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTT 46756 | ||| | |||||||| |||||| || || ||||| ||||| ||||| ||||||| Sbjct 101240 TAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGATGCCTT 101299 Query 46757 CTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGA---ATCCACC 46813 | ||||| ||||| || | ||||| || | || || |||||||| | ||||| Sbjct 101300 CAACAGCAGCGAAAGCAATTAGTCTTTCAGC--AAATGA-ATCATTATCATTGATCCA-- 101354 Query 46814 TTTGA--GCCCAATCAGCCTTTTTCT---TTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||| | ||||| ||||| || | ||||| |||| | || || |||| Sbjct 101355 TTTCATTGCCCATGATGCCTTCTTTTGAATTACA---GGCACATTGTCAATGGCATG--- 101408 Query 46869 GAGAAAGt---ttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 ||| |||| ||||||||| ||| | | || ||||| || || ||| ||| | Sbjct 101409 GAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGT 101468 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 ||| ||||| || ||||| || || || | |||||| || |||||||| ||||| | ||| Sbjct 101469 TTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAAT 101528 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 || || |||||||| ||| ||| | || |||||||| || ||||||||||| ||||| Sbjct 101529 TTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGC 101588 Query 47046 AAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTC 47105 ||| || |||||||||| ||||||||| | ||||| || | | | ||| | ||| || Sbjct 101589 AAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATC 101648 Query 47106 ATTGATATC-----------------TTTT-------GATATATCTACTTCTTCAGCTGT 47141 || | ||| |||| | | ||| | ||| ||||| || Sbjct 101649 TTTAAGATCCTAGAATTTAACTAAAATTTTTACTTAATAAAGATCAATTTCCTCAGCAGT 101708 Query 47142 CCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAAA 47201 ||| || |||| || ||| ||||||||||| |||||| || | || || || Sbjct 101709 CCAAAAGCTAGCCTTGTGTTATTTGTACATATTCCAGATATCATTGTACTTAATTGGGAA 101768 Query 47202 AATAACAAATCTATTTGGATTT-TTTGCAAGTATAGGTTC 47240 | |||||| |||||||||||| || ||| |||||||| Sbjct 101769 CAGAACAAACCTATTTGGATTTGGTTTCAA-AATAGGTTC 101807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927475624640