Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2 116 9e-21 seq6 95.1 3e-14 seq753 86.0 1e-11 >seq2 Length=701642 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | |||||| || || |||||||| || ||||| || | | ||| Sbjct 527900 CTAAGTCTCAACACCAAATGAAGTGTGGATTCTTTTTGAATATTGTAGTCTGAGAGTGTT 527841 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||| |||||||||||||| || | | || | | ||||||| Sbjct 527840 CTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCT 527781 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||| ||||| |||||||| || | ||||||| || || |||||| Sbjct 527780 TCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTGATGGTTCAACATCAAGA 527721 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || ||||| || || | ||||| ||||||| | |||| Sbjct 527720 GTGATGGTTTTTCCTGTCAATGTCTTGACGAAGATTTACATT 527679 Score = 107 bits (118), Expect = 4e-18 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | || || || || |||||||| || ||||| || | | ||| Sbjct 528622 CTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTT 528563 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||| |||||||||||||| || | | || | | ||||||| Sbjct 528562 CTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCT 528503 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| |||||| | || | ||||||| || || |||||| Sbjct 528502 TCTTTATCTTGGATTTTAGCTTTGACTGCATCAATTGTGTCTGATGGTTCAACATCAAGA 528443 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || || | ||||| ||||| | ||||| || Sbjct 528442 GTGATGGTTTTTCCTGTTAATGTCTTTACGAAAATTTGCATATT 528399 Score = 95.1 bits (104), Expect = 3e-14 Identities = 155/222 (70%), Gaps = 1/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | || || || || |||||||| || ||||| || | | ||| Sbjct 528849 CTAAGTCTCAATACTAAGTGGAGTGTTGATTCTTTTTGAATATTGTAGTCTGAGAGTGTT 528790 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||||| ||| |||||||||||||| || | | || | | ||||||| Sbjct 528789 CTTCCATCTTCTAATTATTTTCCGGCGAAGATAAGTCTTTATTAATCGGGTGGGATTCCT 528730 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || |||| ||||| |||||||| || | |||||| | | || |||||| Sbjct 528729 TCTTTGTCTTAGATTTTAGCTTTGACAGCATCAATTGTGTCTG-ATGGTTAACGTCAAGA 528671 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | ||||| ||||||| | |||| Sbjct 528670 GTGATGGTCTTACCAGTCAATGTCTTGACGAAGATTTACATT 528629 >seq6 Length=529034 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||||| ||| || |||||||| |||||||| || | | | | || ||||||| || Sbjct 15470 ATGAACAGTTGATTCTTTTTGAATGTTGTACTCAGAGAGAATCCTTCCATCTTATAATTA 15529 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 ||| || ||||| | || || || || | | |||||||||| | || ||||| Sbjct 15530 TTTTCCTGCGAAAAGGAGTCTTTGTTGACATGGTGGTGTTCCTTCCTTGGCATGGATTTT 15589 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 ||||||| | ||||| ||||||| || || ||||||||||||||||| || || Sbjct 15590 AGGTTTGACTGAATCTACAGTGTCTGATGGTTCAACATCAAGAGTAATAGTTTTCCCAGT 15649 Query 152081 GAGAGTCTTCACGAAGA 152097 || |||| || |||| Sbjct 15650 AAGTGTCTGAACAAAGA 15666 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 10655 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 10714 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 10715 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 10774 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 10775 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 10834 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| ||||| Sbjct 10835 TGTTTTTCCAGTGAGTGTCTTAACGAA 10861 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 11637 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 11696 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 11697 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11756 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 11757 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 11816 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| ||||| Sbjct 11817 TGTTTTTCCAGTGAGTGTCTTAACGAA 11843 Score = 89.7 bits (98), Expect = 1e-12 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 14417 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 14476 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 14477 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 14536 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 14537 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 14596 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| ||||| Sbjct 14597 TGTTTTTCCAGTGAGTGTCTTAACGAA 14623 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 10883 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 10942 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 10943 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11002 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 11003 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 11062 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| || || Sbjct 11063 TGTTTTTCCAGTGAGTGTCTTAACAAA 11089 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 11865 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 11924 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 11925 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 11984 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 11985 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12044 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| || || Sbjct 12045 TGTTTTTCCAGTGAGTGTCTTAACAAA 12071 Score = 86.0 bits (94), Expect = 1e-11 Identities = 144/207 (70%), Gaps = 1/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 12093 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 12152 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 12153 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 12212 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 12213 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12272 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| ||||| Sbjct 12273 TGTTTT-CCAGTGAGTGTCTTAACGAA 12298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 12320 TCTTAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 12379 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 12380 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 12439 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 12440 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 12499 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAA 152095 ||||| || ||||| ||||| || || Sbjct 12500 TGTTTTTCCAGTGAGTGTCTTAACAAA 12526 >seq753 Length=230 Score = 86.0 bits (94), Expect = 1e-11 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||||| || || || ||||| || ||||| || | | ||||| || Sbjct 26 TCTAAGAACTAAGTGAAGTGTTGATTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCC 85 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 ||||||| || || || || || || || | || || | | |||||||||||| Sbjct 86 GTCTTCTAATTACTTTCCAGCAAAAATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTT 145 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 |||| |||||| |||||| | || | | ||||| || || |||||||| || Sbjct 146 GTCTTAAATTTTAGCTTTGACTGCATCAATAGTATCTGATGGTTCAACATCAAGAGTGAT 205 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACG 152093 ||||| || ||||| ||||| ||| Sbjct 206 TGTTTTTCCAGTGAGTGTCTTAACG 230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153809313353367