Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq39 125 1e-23 seq6 100 6e-16 >seq39 Length=303829 Score = 125 bits (138), Expect = 1e-23 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| |||| ||| ||||| || | ||| || | || || || |||||||| || ||||| Sbjct 63042 TTCCTTTTAGATATTGTAATCTGAAAGAGTTCTTCCGTCTTCAAGTTGTTTTCCTGCAAA 62983 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || ||| || ||||| || |||||||| | ||||||||||| || | Sbjct 62982 AATAAGTCTTTATTGATCGGGGGGAATGCCTTCCTTGTCCTAAATCTTTGCTTTAACTGC 62923 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 |||||| ||||| |||| |||||| || || ||||| |||||||| || || || ||||| Sbjct 62922 ATCGATGGTGTCAGAAGGTTCGACATCAAGTGTGATTGTCTTACCTGTTAAGGTTTTAAC 62863 Query 283088 GAATATCTGCAT 283099 || || | ||| Sbjct 62862 AAAAATTTACAT 62851 >seq6 Length=529034 Score = 100 bits (110), Expect = 6e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || |||||||||| || || | || || |||| || || || ||||| Sbjct 10679 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 10738 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || ||| || || || || |||||||||| || || ||||| || | Sbjct 10739 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 10798 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| ||||| || || | ||| || || |||||||| || || || || | |||||||| Sbjct 10799 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 10858 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 10859 GAAAATTTACATT 10871 Score = 100 bits (110), Expect = 6e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || |||||||||| || || | || || |||| || || || ||||| Sbjct 11661 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 11720 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || ||| || || || || |||||||||| || || ||||| || | Sbjct 11721 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 11780 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| ||||| || || | ||| || || |||||||| || || || || | |||||||| Sbjct 11781 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 11840 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 11841 GAAAATTTACATT 11853 Score = 100 bits (110), Expect = 6e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 282908 TTCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAA 282967 ||| ||||| || |||||||||| || || | || || |||| || || || ||||| Sbjct 14441 TTCCTTTTGAATATTGTAGTCAGAGAGTGTTCTTCCGTCTTCTAATTACTTTCCAGCAAA 14500 Query 282968 GATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGT 283027 || | | || ||| || || || || |||||||||| || || ||||| || | Sbjct 14501 AATGAGTCTTTATTGATCGGGTGGGATTCCTTCCTTGTCTTAAATTTTAGCTTTGACTGC 14560 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| ||||| || || | ||| || || |||||||| || || || || | |||||||| Sbjct 14561 ATCAATAGTATCTGATGGTTCAACATCAAGAGTGATTGTTTTTCCAGTGAGTGTCTTAAC 14620 Query 283088 GAATATCTGCATT 283100 ||| || | |||| Sbjct 14621 GAAAATTTACATT 14633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046728779384158