Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq10 277 2e-69 >seq10 Length=460275 Score = 277 bits (306), Expect = 2e-69 Identities = 465/669 (70%), Gaps = 23/669 (3%) Strand=Plus/Plus Query 23338 AGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAGT 23397 || ||||| || ||||||||||| ||||| ||| | | || || || |||| | Sbjct 101002 AGTCTATCAGCAACAAATTCAATGTATTGTTTCATGAGTGTTGAATTCATTCCAATTAAT 101061 Query 23398 TTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTATT 23457 | |||||| | || ||| | |||| |||||||| | ||||||| | ||| ||| Sbjct 101062 TCTACTGGTAATGCTTCACTAATGAATTCCTTTTCAATAGCAACAGCAGATGAAATAATT 101121 Query 23458 TGAACAATAACTTCTTCACTAGGTGGATATTTTAA-------ATACTTAAACAATAAACA 23510 | | || |||| | |||||| |||| || ||| | | |||||| Sbjct 101122 TCATGGAT----TCTTTGAT---TGGATAGTTTATTGACCATATGCTTGTAGAGTAAACA 101174 Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||| ||||| |||||||| || ||||||||||| || ||||||| ||| Sbjct 101175 AGCAAAATCAGTATGTAATCCTTCATCTCTTGATATCAATTCATTGGAGAATGTTAGTCC 101234 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 |||||| | | || ||||| |||||||| || ||| ||| || || || ||||| || Sbjct 101235 TGGCATAAGTGATCTCTTTTTGATCCAAAAAATGGCACAAAAAGAACCAGAGAAGAAGAT 101294 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 || |||||||| || || || | || | | | |||||| |||||| || || Sbjct 101295 GCCTTCAACAGCAGCGAAAGCAATTAGTCTTTCAGCAAATGAATCATTATCATTG---AT 101351 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATT---TTACACACTCAATTGTTTCAATTGCTTT 23747 |||||| ||| ||| |||||| || ||||| | || |||| |||| || | Sbjct 101352 CCATTTCATTGCCCATGATGCCTTCTTTTGAATTACAGGCACA-TTGT--CAATGGCATG 101408 Query 23748 TAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACAT 23807 | | || ||||||| | | ||| || || || |||||||| | | | ||| | Sbjct 101409 GAGTAAGTAATTTTTTTCATTTTCATCAGTGATGTAAGTATCAATCAAGAGAGAATATGT 101468 Query 23808 TTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAA 23867 ||||||||| |||||||| || ||||| | ||| ||||| |||||||| ||||| | | Sbjct 101469 TTCAGAATGTATATTTTCCATGGCAATTTAAAATCCATAGAAACATCTGGCTTCTGGAAT 101528 Query 23868 TTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGC 23927 |||||| || || | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 101529 TTGAACTTCTGTACAGAATTGTTATGCTAAGTTCTCATTGACAATTCCATCACTGGCAGC 101588 Query 23928 AAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATC 23987 ||||||||| | |||||||| ||||| || |||| || | |||||||| |||||| Sbjct 101589 AAAGAAAGCCAATACATATTTAATAAAGTGCTTTTCTTCTGACTTTAATTTTTCCCAATC 101648 Query 23988 ATTAATATC 23996 |||| ||| Sbjct 101649 TTTAAGATC 101657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482935047800