Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20caudatum_20[genbank_20GCA_5F000715435.1_202014-06-30] 777 sequences; 30,480,878 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq5 118 1e-21 >seq5 Length=531512 Score = 118 bits (130), Expect = 1e-21 Identities = 362/561 (65%), Gaps = 18/561 (3%) Strand=Plus/Minus Query 155895 TCATCGGGTAATCCAATTTCTATCTTCAATTCCAACCGCCCAGGTCTTAATAATGCTTCG 155954 ||||| || | || | ||| || | | ||| || | |||||||| |||| |||||| Sbjct 504497 TCATCTGGAAGACCCACTTCAATATGAACTTCAAATCTTCCAGGTCTCAATACTGCTTCA 504438 Query 155955 TCAATTAAGTCGGGTCTGTTGGTCATACCTATGATTAAAATGTTGTTTAAAGATTCTACA 156014 |||||||| || ||| || ||||| ||||| | | ||| || |||||||| | ||| Sbjct 504437 TCAATTAAATCTTTTCTATTTGTCATTCCTATAACAAGAATATTATTTAAAGAGTTAACA 504378 Query 156015 CCGTCTATTTTAGACAATAATTGATTGACTACGGCGTCGTGCGTGGC-GTT--------- 156064 || || || | || || |||| ||| || || || | | | ||| Sbjct 504377 CCATCAATCATTGATAACAATTAATTTACAACATTATCATATGCTCCTGTTCCAGAATTA 504318 Query 156065 --ATCACCGCGTTTTTTACACAGAGCATCTATTTCATCGAAGACGATAACGTGTAATCCG 156122 | ||| | || |||||| | ||||| |||||||| || || |||| |||||| | Sbjct 504317 ATAGAACCTCTTTATTTACAAATTGCATCCATTTCATCAAATACTATAATATGTAATTCA 504258 Query 156123 CTGGCTAAACCCAATTTNNNNNNNNNNNNNNNA--GCCTCTTGAAACAATCGTCTGACGT 156180 || | | ||| ||| | || || ||| ||| ||| || | Sbjct 504257 CTTTC--ATCCCCCTTTGATTCTTAATCTGCAATAGCTTCAGCAAATAATTTTCTAACAT 504200 Query 156181 TAGCTTCCGATTCACCCACATATTTGTTTAATAATTCAGGACCGTTAACTATTTTGACGG 156240 | |||| | ||| || ||| |||| | |||| ||| || || ||||| ||||| | | Sbjct 504199 TTTCTTCAGCTTCTCCAACAAATTTACTAAATATTTCTGGTCCATTAACGATTTT-AGGT 504141 Query 156241 GTCGT-GATTTAAAAGCTTGAGCGATACAGCGAGCCATTAATGTTTTACCGCACCCAGGA 156299 | | | | | | || ||| ||| | | | || || | ||||||||| ||||| Sbjct 504140 GCCTTAGCTCTTAATACTTTAGCCAATTATCTTGCTATAAGTGTTTTACCTGTACCAGGT 504081 Query 156300 GGTCCGTATAACAATACTCCTTTTATATGTTTACAACCTAATTTTTCAGTTATTTCTACC 156359 ||||| ||||| || | || |||| ||||||| || ||||||| | || | Sbjct 504080 GGTCCATATAATAACATACCCTTTACATGTTTAATTCCATATTTTTCTAAAAATTATTAT 504021 Query 156360 GGAACTGATCTGGAAGCAAATGCTCTTCGAAAAATGAGAGAAAATTCTTTATCCAATCCC 156419 |||| | ||| |||| |||||||||| |||||| || ||||||||||| || || Sbjct 504020 GGAAATCTTCTTGAAGAGAATGCTCTTCTAAAAATATTAGCTAATTCTTTATCTAAACCT 503961 Query 156420 CCCACACCCATTTCCTCAAAA 156440 || || || | || |||||| Sbjct 503960 CCTACTCCTAATTTATCAAAA 503940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667068721032120