Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq111 89.7 1e-12 >seq111 Length=285051 Score = 89.7 bits (98), Expect = 1e-12 Identities = 189/276 (68%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 281559 GGATTATAACTGGGAATGTTAGTAGACCAACCGGTTCCAATACCACTTGAACCATTTACC 281618 ||||||||| | |||| || |||||||| || |||||||| | |||||||| Sbjct 62145 GGATTATAATTTTGAATAGATGTTGACCAACCAGTACCAATACCTTCAGCTCCATTTACT 62086 Query 281619 AAAATACTCGGGATAATAGGTACATAACATTCTGGTTCAATTTTATCACCATCATCATAC 281678 ||| | | || |||||||| |||||| | |||||||||| | | ||||| || | | Sbjct 62085 AAACTCATTGGTATAATAGGAACATAATAATCTGGTTCAACCATCTATCCATCGTCTTCC 62026 Query 281679 AAATACTTCAGAAGGTTATCATCTGTATCGACGAAA-ACCTGTCGCGTCTTAGGGTTCAG 281737 |||||||||| | | ||||||| ||| |||| | |||| || | || || Sbjct 62025 AAATACTTCAATAAATGATCATCT-TATTCTGGAAATATATGTCTAGTAATTTTATTTAG 61967 Query 281738 TTTCGTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGAC--CCA 281795 || | ||||| |||||| || || |||||||||||| || ||| || ||| Sbjct 61966 AGCTGTAGAAATATATCTTGCAGATGCATGATCTTTACCACCC-ATAG-CTCTACTACCA 61909 Query 281796 AACTGACCCTCCGGCAACAACCAGTTAATGTTATTG 281831 |||| ||| | || || | | ||||| |||||| Sbjct 61908 AACTAACCTTTTGGTAAAAGTAAATTAATATTATTG 61873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057816640520090