Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq80 163 3e-35 >seq80 Length=351589 Score = 163 bits (180), Expect = 3e-35 Identities = 526/808 (65%), Gaps = 30/808 (4%) Strand=Plus/Minus Query 16629 CATCCAATGAAAATGTGTTATCTTGTTTATGA---ACAACACCCATTCTTTGGTAATCGC 16685 |||||| | |||| ||||||||||| | | | ||| || | ||| || || | Sbjct 175356 CATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTTAATAGTCTC 175297 Query 16686 TAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAA 16745 || | | ||||||| || || ||||| || | || ||||| | ||||| | |||| Sbjct 175296 CGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCATCCATTCAA 175237 Query 16746 AAGGATTAGTAGCTGAAA---ATATTTTAGAGTACCCC-AGTTCGGCGATTAATCTATCC 16801 ||||||| | |||| ||||||||| || | || | ||||||||||| Sbjct 175236 AAGGATTCTT---TGAATTGTATATTTTAG-GTGCTCCTAAAGAAAATATTAATCTATCT 175181 Query 16802 GCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGA 16861 || |||||||||||||||| |||||| | | |||||||| || | || || Sbjct 175180 GCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAACTGGT 175121 Query 16862 AGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACT 16921 | |||||| | | |||| || || || |||| ||| |||||| | || | Sbjct 175120 AAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTTAATGAATT 175061 Query 16922 CGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGT 16981 |||| | | | ||| | | ||||||| | | ||||| || ||||| || Sbjct 175060 CGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAAATCAGTGTGA 175001 Query 16982 AATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGT 17041 | ||| || ||||| |||||||| || ||||| || | || ||||| | || | Sbjct 175000 AGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATTAATGATCTT 174941 Query 17042 TTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCA 17101 || || | |||||| || || || || ||||||||||| || || || || | ||| Sbjct 174940 TTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCA 174881 Query 17102 AACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCAC 17161 || |||||||||| ||| || | | || || | | |||||| ||| ||||| Sbjct 174880 AAAGCGATTAATCTTTCAGCAAA---TGAATCATTCTAATTAATCCACTTCATTGCCCAC 174824 Query 17162 TCGGCTTTTTGCTTTAT----GCAATCCATCGTTTCTATGGCCT----TAAATAATTTCT 17213 ||||||| | ||| | || ||| | || || || | | |||||| Sbjct 174823 ATTGCTTTTTTTTGTATAACAGGAA--CAT--TGTCAATAGCATGTAGAAGATAATT--- 174771 Query 17214 CTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTA 17273 |||||| | | || |||| || || || || | || || |||| || |||| Sbjct 174770 -TTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATGTA 174712 Query 17274 TGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCA 17333 | |||||||| ||||| | ||||| ||||| |||| |||||| | ||||||||||| Sbjct 174711 TATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTCAG 174652 Query 17334 CGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCA 17393 | ||| | ||||| ||||| || || || || || || || || || || || | Sbjct 174651 TACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAAGCAA 174592 Query 17394 ATATATGCTTAATGAAATATTTTTCGTC 17421 | || ||| || |||| ||||||||| Sbjct 174591 GGACATACTTTATAAAATGTTTTTCGTC 174564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517542087159240