Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq75 224 1e-53 seq80 223 4e-53 >seq75 Length=370783 Score = 224 bits (248), Expect = 1e-53 Identities = 600/914 (66%), Gaps = 45/914 (5%) Strand=Plus/Plus Query 15912 TTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTT 15971 ||| |||||| | || | | |||||||||| |||||||| || | || ||||| | | Sbjct 196174 TTTAGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATAT 196233 Query 15972 CCATAAAATCAAAGGGATTAGTAGCTGAAA---ATATCTTAGAGTACCCCAGTTCCGTA- 16027 |||| | ||||| ||||| | |||| |||| |||| || | || | | | Sbjct 196234 CCATCCATTCAAAAGGATTCTT---TGAATTGTATATTTTAG-GTGCACCTAATGCAAAT 196289 Query 16028 ACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTAT- 16086 | || ||||||||| |||||||| ||||||| |||||| | |||| ||||| || Sbjct 196290 ATTAGTCTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATT 196349 Query 16087 AAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAAT 16146 || ||| || || | ||||| ||| ||||| || ||| || |||| || | || Sbjct 196350 AATTCG-ACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATAT 196408 Query 16147 GATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGC 16206 || || |||| | | | | ||| || |||||| | | ||||| || Sbjct 196409 AATTTCATGAATTCGTTGATTACTCAATTTATTTACTAAGTGTTTGTAAAGAAGACAAGC 196468 Query 16207 GAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGG 16266 || || ||| || ||||| ||||| || | ||| || ||||| |||| ||||| Sbjct 196469 AAAATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGG 196528 Query 16267 CATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACC 16326 ||| | || || |||| ||||||||| ||| |||||| || |||||||| ||||| Sbjct 196529 CATCAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACC 196588 Query 16327 CTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCA 16386 ||||| | |||||||| ||||||| ||| || | | ||| || || ||||| Sbjct 196589 TTCAACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTTT---ATCCA 196645 Query 16387 TTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAA 16446 |||| |||| ||||| | || |||| | || | || || || | || | Sbjct 196646 TTTCATAGCCCACATTGCTTTCTTTTATATAACAGGCACATTATCAATAGCATGAAGAAG 196705 Query 16447 TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG--TACATTTCT 16504 | | |||||| | ||| | ||||| |||||||| | ||| || || ||||| Sbjct 196706 GTAATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTA--AAAGTGAGTAAGTTTCT 196763 Query 16505 GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGT 16564 ||||| || || || || ||||| | ||||||||| || |||| || || | | ||| Sbjct 196764 GAGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGA 196823 Query 16565 ACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAA 16624 ||||| | ||| || |||| || |||||||| || || |||||||| ||||| Sbjct 196824 ACTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAG 196883 Query 16625 AACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTT 16684 || || | | | ||| || || | |||||| || | ||| || | | |||||||||| Sbjct 196884 AAAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAATCTTTT 196943 Query 16685 AAATC--------------TTTGGATAT--------------ATCCACTTCTTCTGGCGT 16716 ||||| ||| |||| ||| | ||||| | || Sbjct 196944 AAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAGCTGT 197003 Query 16717 CCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||||| || || | ||||||||| |||||||||||||| |||| ||| ||||| Sbjct 197004 CCAAAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAGGAAA 197063 Query 16777 TACGACGTATCTAT 16790 | || |||||| Sbjct 197064 CAATACAAATCTAT 197077 >seq80 Length=351589 Score = 223 bits (246), Expect = 4e-53 Identities = 510/763 (67%), Gaps = 15/763 (2%) Strand=Plus/Minus Query 15933 TTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG 15992 |||||||||| || ||||| || | ||| ||||| | ||||| | ||||| ||||| Sbjct 175287 TTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCATCCATTCAAAAGGATTCT 175228 Query 15993 TAGCTGAAA---ATATCTTAGAGTACCCCAGTTCCGTAACTA---ATCTATCTGCTACAA 16046 | |||| |||| |||| || | || | | || || |||||||||| |||| Sbjct 175227 T---TGAATTGTATATTTTAG-GTGCTCC--TAAAGAAAATATTAATCTATCTGCAACAA 175174 Query 16047 ATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTT 16106 |||||||||||| |||||| | |||| ||||| || | | || || | ||||| Sbjct 175173 ATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAACTGGTAAAGCTT 175114 Query 16107 TTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTT 16166 | | ||||| || ||| || |||| ||| | ||| || | |||| | Sbjct 175113 CACTAATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTTAATGAATTCGTTGAT 175054 Query 16167 CAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTT 16226 | | | ||| | | |||||| | | ||||| || || || || ||||||| Sbjct 175053 TACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAAATCAGTGTGAAGTCCTT 174994 Query 16227 CGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTA 16286 | ||||| |||||||| || ||||| || | || |||||| | || ||| || | Sbjct 174993 CATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATTAATGATCTTTTTTTGA 174934 Query 16287 ACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || || ||| |||||| || |||||||| || || ||||||| |||||||||| Sbjct 174933 TCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCAACAGCAGCAAAAGCGA 174874 Query 16347 TTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTT 16406 |||||| ||| || | | | ||| | ||| |||||| ||| | |||| |||| Sbjct 174873 TTAATCTTTCAGCAAATGAATCATTCTAATT---AATCCACTTCATTGCCCACATTGCTT 174817 Query 16407 TTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATAT 16466 ||| || |||| | | | || || || | | | | | |||||| | || Sbjct 174816 TTTTTTGTATAACAGGAACATTGTCAATAGCATGTAGAAGATAATTTTTTTCATTTTCAT 174757 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 | |||| || || ||||||| | | || ||||||| ||||| ||||| || |||| Sbjct 174756 CAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATGTATATTCTCCATAGCTA 174697 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 | | |||||||| || |||| || || | ||||| ||||| ||||| | | Sbjct 174696 TTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTCAGTACAAAATTACTAAG 174637 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGA 16646 | ||||| ||||| || ||||| |||||||| ||||| || || | | | ||| || | Sbjct 174636 CTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAAGCAAGGACATACTTTATAA 174577 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATC 16689 ||| ||||||||| | || || | | ||||||||| | ||| Sbjct 174576 AATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATCTTTAAGATC 174534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511410928774760