Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq59 109 4e-19 >seq59 Length=418960 Score = 109 bits (120), Expect = 4e-19 Identities = 392/598 (66%), Gaps = 19/598 (3%) Strand=Plus/Minus Query 101676 TTTTAAGAGCATCAATGTGATCTAC-ATAGATGTGAGCATCTCCTATAGTATGGATAAAC 101734 |||||| |||||| | |||| ||| ||| || || | ||| |||| | ||| ||||| Sbjct 374903 TTTTAA-AGCATCTACATGAT-TACTATAAATATGTGTATCACCTAAAACATGAATAAAT 374846 Query 101735 TCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCA 101794 ||||| | ||| | | |||| ||| | ||||| | | ||| |||||| Sbjct 374845 TCTCCTAAATTCAAATTGCATTCCTTTGCAAGCATATATGTTAATAAGGCATAACTAGCA 374786 Query 101795 ATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGC 101854 || || ||||| | |||||| || | |||| |||||| | ||||| || | Sbjct 374785 ATATTGAATGGTATTCCTAAACCAAAATCACATGATCTCTAATACATCATGCAACTCAAT 374726 Query 101855 TTTCCATCACAGACATAAAATT--GACTTAATACATGACAAGGCGGCAA---CA-CCATT 101908 || |||| ||| |||||| ||| | |||||||||||| ||||| || | ||| Sbjct 374725 TTACCATTTGCTACAAAAAATTACGACAT--TACATGACAAGGTGGCAATGCCATCTATT 374668 Query 101909 TTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCTATCTGTAGGGTTTGTT 101968 ||| ||| || | ||||||||| ||| || || |||||| || | || || || Sbjct 374667 TTA--AATCGCT--AGGATTCCAAGCCGACAATATAATTCTTCTA-CTATTTGGATTATT 374613 Query 101969 TTTATAGTATCAATCAAC-TGTTTTAATTGGTCAACTCCTTCTCCTTTATAATCGCGCCC 102027 |||| ||| || ||| | ||||| || || ||||||| |||||||| | Sbjct 374612 TTTAAGTTATTAAATAACATCTTTTACTTAATCCACTCCTTAATTATTATAATCACTTTA 374553 Query 102028 AACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATC 102087 | | | ||||||| || || ||||| ||||| | ||||||||| || ||||| | ||| Sbjct 374552 ACAATCCTTATATTTGGCACCAAAATGTCTCCATTAAAATCCATATACTGGTCCCAAATC 374493 Query 102088 TCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATC 102147 || | ||| || | || |||| ||| ||| | ||| | |||||| | || Sbjct 374492 ATGCTCCTATCTCTCTTTTAATCCAATACTATTCAAATAGTCTCTTGTTCCATTTCCTTC 374433 Query 102148 CCAAATGTGCA-CGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACC 102206 ||| || | | | | | | ||| | ||| | ||| ||| ||| | | ||||| Sbjct 374432 CCATATCTTAATCTTCTTAT-CCAATAATTATTTTCCGTCTGTATTGCCTTTTAAAAACC 374374 Query 102207 ACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 |||| | || || ||||| || | | |||||| | || || ||||| | ||||| Sbjct 374373 ACAATAACTCCTCTACAACTCCACGAAAGAATACTTTTTTTGTTGTTAATAAAGGAAA 374316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361248809307293