Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq59 120 2e-22 >seq59 Length=418960 Score = 120 bits (132), Expect = 2e-22 Identities = 389/591 (66%), Gaps = 16/591 (3%) Strand=Plus/Minus Query 97047 AGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGG 97106 |||||| | ||||| |||||| || | ||| |||||| |||||||||||||| Sbjct 374897 AGCATCTACATGATTACTATAAATATGTGTATCACCTAAAACATGAATAAATTCTCCTAA 374838 Query 97107 AACTAAAT--CAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTA 97164 | |||| || | | | || | |||| | ||||||| | ||| |||||||| || Sbjct 374837 ATTCAAATTGCATT--CCTTTGCAAGCATATATGTTAATAAGGCATAACTAGCAATATTG 374780 Query 97165 AAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA 97224 || || | |||| || | |||| |||||| | ||| | | || | || ||| Sbjct 374779 AATGGTATTCCTAAACCAAAATCACATGATCTCTAATACATCATGCAACTCAATTTACCA 374720 Query 97225 TCACACACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCA--TTTTTGGAACAT 97282 | ||| |||| | || ||||||||| || ||||| |||| | ||| || Sbjct 374719 TTTGCTACAAAAAATTACGACATTACATGACAAGGTGGCAATGCCATCTATTTTAAATCG 374660 Query 97283 CTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTAT 97342 ||| | ||||||||| ||| | ||||||||| | || || || | | || | ||| Sbjct 374659 CTAGG--ATTCCAAGCCGACAATATAATTCTTCTA-CTATTTGGATTATTTTTAAGTTAT 374603 Query 97343 TAATTATC-TGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGA--CCTT 97399 ||| || | | |||| || ||| || |||| | |||| | |||| | |||| Sbjct 374602 TAAATAACATCTTTTACTTAATCCACTCCTTAATTATTATAA-TCACTTTAACAATCCTT 374544 Query 97400 GATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTT 97459 ||||| || |||||||| ||||||| |||||||| || ||||| | || || | Sbjct 374543 -ATATTTGGCACCAAAATGTCTCCATTAAAATCCATATACTGGTCCCAAATCATGCTCCT 374485 Query 97460 CTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGT 97519 ||| || || |||| ||| |||||| || | ||||||| | ||||| || | Sbjct 374484 ATCTCTCTTTTAATCCAATACTATTCAAATAGTCTCTTGTTCCATTTCCTTCCCATATCT 374425 Query 97520 GCA-CACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAAT 97578 | | | || | || | ||| | ||| ||| ||| | | ||||||||| || Sbjct 374424 TAATCTTCTTATCCAATAA-TTATTTTCCGTCTGTATTGCCTTTTAAAAACCACAATAAC 374366 Query 97579 TCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAA 97629 || || ||||| || | | |||||| | || |||||||| | ||||||| Sbjct 374365 TCCTCTACAACTCCACGAAAGAATACTTTTTTTGTTGTTAATAAAGGAAAA 374315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346781705048510