Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq28 141 1e-28 seq21 141 1e-28 seq25 132 7e-26 seq82 123 4e-23 seq56 114 2e-20 seq143 111 2e-19 seq103 96.9 5e-15 >seq28 Length=561789 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| ||||| ||||| ||||| | ||| |||||||| | || |||||||||||| Sbjct 90771 CCTCCTCTGAGTCTCAATACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 90830 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || ||||| |||||||||||||||||||||| | ||| || || Sbjct 90831 AGAGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATCAATCTTTATTAATCAGGTGGG 90890 Query 146171 ATTCCTTCTTTATCTT 146186 ||||||||||| |||| Sbjct 90891 ATTCCTTCTTTGTCTT 90906 >seq21 Length=592296 Score = 141 bits (156), Expect = 1e-28 Identities = 113/136 (83%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 |||||||| | ||| || || |||||||| || |||||||| | ||||| ||||||||| Sbjct 450419 CCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAA 450360 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| |||| ||||||||| |||||||||||||||| | ||| || || Sbjct 450359 AGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGG 450300 Query 146171 ATTCCTTCTTTATCTT 146186 |||||||| ||||||| Sbjct 450299 ATTCCTTCCTTATCTT 450284 >seq25 Length=585425 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||||||||| || || ||||| | ||| |||||||| | || |||||||||||| Sbjct 450120 CCTCCTCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 450061 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||| | ||| || ||||| |||||||||||||| ||||||| | ||| ||||| Sbjct 450060 AGTGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 450001 Query 146171 ATTCCTTCTTTATCTT 146186 |||||||| || |||| Sbjct 450000 ATTCCTTCCTTGTCTT 449985 >seq82 Length=350351 Score = 123 bits (136), Expect = 4e-23 Identities = 238/348 (68%), Gaps = 6/348 (2%) Strand=Plus/Plus Query 209072 GGATTATCTAAAGGATTACACGGATTTCATGTTCATGAATATGGTGATGTGAGTAATGGT 209131 |||||||| | ||||||||||| ||||| ||||||||| ||| || | | ||| || Sbjct 85242 GGATTATCAGATGGATTACACGGGTTTCACATTCATGAATTTGGAAATTTAATTAAAGGA 85301 Query 209132 TGTACATCAGCAGGAGAACATTTTAATCCATATAATAGACAACATGGAGATATTAGTGAT 209191 |||| || || ||| |||| ||||||| || | | |||||||| | | | || Sbjct 85302 TGTATTTCTGCTGGACCTCATTATAATCCACATGGAAAATTACATGGAGGTCCAAAT-AT 85360 Query 209192 AAAATACATCGTCATGTTGGTGATTTTGGTAATGTGTATGCAGACGAAAATGGCGTTGCT 209251 |||| | | | |||||||||||||| || ||||| || || || ||||| ||||| Sbjct 85361 AAAAGAAA--GACATGTTGGTGATTTGGGAAATGTTCATTCA---GAGAATGGAATTGCT 85415 Query 209252 AATATTGATTTTCACGATGATATTATATCATTGTGTGGAACAAATAATATAATAGGAAGA 209311 || || | || |||||| | | ||| |||| | || | ||||||||||| Sbjct 85416 TATTTTAAATTAACTGATGATTTAGTGAAATTAAGTGGCGAATTTAGTGTAATAGGAAGA 85475 Query 209312 ACATTAGTAGTTCATGATTCGCCTGATGATTTAGGAAAAACTGATCACCCTTTGAGTAAA 209371 | | || ||||||| |||||| | || ||||||||||| || |||||| Sbjct 85476 TCTATGGTTGTTCATGCAAATGAAGATGATCTTGGTAAAACTGATCATCCGGACAGTAAA 85535 Query 209372 ACAAGTGGTAATTCTGGCGGAAGATTAGGTTGTGGTATTATTGGTATT 209419 | | ||||||| |||| | | |||| |||||| | || || ||| Sbjct 85536 AGTACTGGTAATGCTGGAGCTCGTTTAGCTTGTGGAGTGATAGGAATT 85583 >seq56 Length=425007 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||||||||| | |||||| || || || | || |||||||| | || ||||| |||| Sbjct 240543 TTCCACCTCTCAATCTTAAGACTAAGTGAAGTGTTGATTCTTTTTAAATGTTATAGTCTG 240484 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 |||||||||| | ||| ||||||| ||||| |||||||| | ||||| | ||| || | Sbjct 240483 AAAGAGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTG 240424 Query 146169 GAATTCCTTCTTTATCTT 146186 | |||||||| || |||| Sbjct 240423 GGATTCCTTCCTTGTCTT 240406 >seq143 Length=219650 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | ||||| || ||||| | || ||||| || | |||||||| |||||| Sbjct 171910 CCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAA 171851 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| ||||||| ||| || |||||||| | |||| || ||| || || Sbjct 171850 AGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGT 171791 Query 146171 ATTCCTTCTTTATCTT 146186 ||||||||||| |||| Sbjct 171790 ATTCCTTCTTTGTCTT 171775 >seq103 Length=295257 Score = 96.9 bits (106), Expect = 5e-15 Identities = 166/233 (71%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 10476 CTAAATAAATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAG--GAAATG 10533 ||||| || ||||| ||| |||| || || |||||||| ||||||||||||| ||||| Sbjct 162555 CTAAA-AACTTTATAGATGTTGGTGCAGGTGTAATTGATGAAGATTATAGAGGAGAAATA 162497 Query 10534 TGGGAGTAATATTATTTAATCATTCTAATGAA-GATTTTATAATAAATAGAGGAGATAGA 10592 || | || |||||||||| | || | ||| ||||||| | |||| ||||||||| Sbjct 162496 TGTGTGT--TATTATTTAA-CTTTGGAGAGAATGATTTTAAAGTAAACTATGGAGATAGA 162440 Query 10593 ATATCTCAATTAATATGTGAAAAAATTTTATATCCTAAAATGTTAAAAGTCGATAGTTTA 10652 || || || | || ||| | || | || | |||| ||| || |||| ||| Sbjct 162439 ATTGCTTAAATGATCATAGAACATGTTGTCTAAACCGAAATTTTAGAAACTGATAATTTG 162380 Query 10653 TCAGAAACAAAAAGATCTGATTTTGGTTTTGGATCTACTG--GTTATAATTAA 10703 | |||||| ||||| || ||||||||||| |||| |||| |||||| Sbjct 162379 ACTGAAACATAAAGAGGAGAAGGAGGTTTTGGATCAACTGGAGTTA-AATTAA 162328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743521353314560