Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq75 381 5e-101 seq80 360 2e-94 >seq75 Length=370783 Score = 381 bits (422), Expect = 5e-101 Identities = 592/833 (71%), Gaps = 17/833 (2%) Strand=Plus/Plus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||||||| ||| | || ||| || ||||||| ||| || ||| ||| ||||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 || || | ||||| |||| |||||||| ||||| |||| ||||| || | |||| Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATC-GCATCCCAATTCCAACAATAAT 16066 | | ||||||||||| |||||| || |||| ||| || ||| | || | || | Sbjct 196237 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCA-CCTAATGCAAATATTAGT 196295 Query 16067 CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTA 16126 ||||| || |||||||| ||||| | ||||||||||| | | |||||||| ||||||| Sbjct 196296 CTATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCG 196355 Query 16127 ACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCT--TCA-ATGATTATA 16183 || || | ||||| ||| ||| | |||||| || | ||| || | | || ||| | Sbjct 196356 ACTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATATAATTTCA 196415 Query 16184 TCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAAA 16243 | || | | || | || | |||| ||||||||| | | | |||||||||| Sbjct 196416 TGAATTCGTTGATTACTCAATTTA---TTTACTAAGTGTTTGTAAAGAAGACAAGCAAAA 196472 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 ||| ||| | ||||| || || ||||| || ||||||||||| || |||||||| Sbjct 196473 TCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGCATC 196532 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 | | || ||||| ||||| ||||| || |||||||||||||||||| ||||||||| Sbjct 196533 AATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCTTCA 196592 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423 ||||| ||||| |||| |||| ||| | | | | ||||| || ||||||||| Sbjct 196593 ACTGCAGCAAAAGCAATTAATCTTTCAGCAAATG-AGTCATTTTAGTT--TATCCATTTC 196649 Query 16424 ttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 ||||||| ||||||| || | || |||| || || || || |||| || | || Sbjct 196650 ATAGCCCACATTGCTTTCTTTTATATAACAG-GCACATTATCAATAGCATGAAGAAGGTA 196708 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACT--ATACATTTCTGAA 16540 ||||||||| || ||| |||||||||||| |||| ||| | || ||||||| Sbjct 196709 ATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTA--AAAGTGAGTAAGTTTCTGAG 196766 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 |||||||| ||||||||||| | ||| |||||||| ||||| ||||| | | ||| ||| Sbjct 196767 TGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAACT 196826 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 |||| | || || || || ||||| || || || ||||| || |||||||| || Sbjct 196827 TCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGAAA 196886 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAAGTTTTAACCAGTC 16713 ||||| | | || ||||| | |||||| | ||| |||||| ||| || Sbjct 196887 GCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTTAGTTTTTCCCAATC 196939 >seq80 Length=351589 Score = 360 bits (398), Expect = 2e-94 Identities = 571/811 (70%), Gaps = 17/811 (2%) Strand=Plus/Minus Query 15888 AAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTTTT 15947 |||||||| ||| | || ||| || ||||||| ||| || ||||||| ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 15948 GATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCA 16007 ||| || | ||||| |||| |||||||||||||| |||| ||| || || | |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 16008 TAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAATAATC 16067 | | ||||||||||| |||||| || |||| ||| || || | ||||| Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186 Query 16068 TATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAA 16127 |||| || |||||||||||||| | ||||||||||| | | |||||||| ||||||| || Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126 Query 16128 CAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTC---AATGATTATAT 16184 | || | ||||| | | ||| | |||||| || | ||| ||| ||| ||| || Sbjct 175125 CTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCTGATGAAATAATTTAAT 175066 Query 16185 CTCTTACTACACTATTTAACGGAGGGTTTAATAAG-TGTTTAAACATTATACAAGCAAAA 16243 || | | || | || | ||||| | |||||| | | | |||||||||| Sbjct 175065 GAATTCGTTGATTACTCAATTTA----TTAATCATATGTTTATATAGGAGACAAGCAAAA 175010 Query 16244 TCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATT 16303 ||| || | |||||| || || ||| | || |||||||| ||||| || |||||| Sbjct 175009 TCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATT 174950 Query 16304 AGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCA 16363 | | || |||||| |||||||| || || |||||||||||||||||| || |||||| Sbjct 174949 AATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCA 174890 Query 16364 ACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatccatttt 16423 || || ||||| || | |||| ||| | | | ||| | | | ||||| || Sbjct 174889 ACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATTA---ATCCACTTC 174833 Query 16424 ttagcccaatttgctttttgtt-tAACACAGTTCATGTTCTCTATTGCATTAAATAAATA 16482 | ||||| ||||||||| || || |||| | || || || |||| | | ||| Sbjct 174832 ATTGCCCACATTGCTTTTTTTTGTATAACAGGA-ACATTGTCAATAGCATGTAGAAGATA 174774 Query 16483 AtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATG 16542 ||||||||| || ||| || ||||| || || | | | ||| |||||||||| Sbjct 174773 ATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAATG 174714 Query 16543 AATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 ||||||||||| ||||| | || |||||||| ||||| ||||| | ||||| ||||| Sbjct 174713 TATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACTTC 174654 Query 16603 AGAGTAAAACCTTTCT--GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAAC 16660 |||| || || || |||| |||||| || || || ||||| || |||||||| || Sbjct 174653 --AGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAA 174596 Query 16661 GCAAGTATGTGTTTAATAAAAtttttttCGT 16691 ||||| | | || ||||||| |||||||| Sbjct 174595 GCAAGGACATACTTTATAAAATGTTTTTCGT 174565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462508860699800