Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq59 136 3e-27 >seq59 Length=418960 Score = 136 bits (150), Expect = 3e-27 Identities = 432/661 (65%), Gaps = 14/661 (2%) Strand=Plus/Plus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGA-ATGCAATCTCGATATAACTTGAG 20036 ||| |||| ||| ||||| |||| |||||||| | | || ||| ||| ||| Sbjct 374250 GATAGAACTGGAGTGGGAACAATATCAATATTTGGATAAACCATGA-GATTTAATTTGGC 374308 Query 20037 AAATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTT 20096 | | ||||| |||||||| || ||| ||||| | || ||||| || ||||| Sbjct 374309 AGAATCTTTTCCTTTATTAACAACAAAAAAAGTATTCTTTCGTGGAGTTGTAGAGGAGTT 374368 Query 20097 ATTATGGTTTATTAAAGGATCAACAAATTCTACCGAGC----TTGTAGAAAAAGGAG-TT 20151 ||| |||||| | ||||| ||| | | || || || | | | ||| || || Sbjct 374369 ATTGTGGTTTTTAAAAGG--CAATACAG---ACGGAAAATAATTATTGGATAAGAAGATT 374423 Query 20152 AAGATTTGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATTTGACAACCGT 20211 ||||| ||| | | ||||| | | | | ||| | || | |||||| | | | Sbjct 374424 AAGATATGGGAAGGAAATGGAACAAGAGACTATTTGAATAGTATTGGATTAAAAGAGAGA 374483 Query 20212 CAAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATAT 20271 | ||| |||||||| || || ||||||||| |||||||||||||||| || ||||| Sbjct 374484 TAGGAGCATGATTTGGGACCAGTATATGGATTTTAATGGAGACATTTTGGTGCCAAATAT 374543 Query 20272 GTTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAAT 20331 || | | ||||| | ||||||| ||| || || || |||||||| | Sbjct 374544 AAGGATTGTTAAAGTGATTATAATAATTAAGGAGTGGATTAAGTAAAAGATGTTATTTAA 374603 Query 20332 TTAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGAT 20391 | | |||||| || ||||| ||||||||||| || | || ||||| ||| ||| Sbjct 374604 TAACTTAAAAATAATCCAAATAGTAGAAGAATTATATTGTCGGCTTGGAATCCTAGCGAT 374663 Query 20392 GTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAAT 20451 | | ||||| ||||| || |||||| | | | |||||| || || ||| | Sbjct 374664 TTAAAATAGATGGCATTGCCACCTTGTCATGTAATGTCGTAATTTTTTGTAGCAAATGGT 374723 Query 20452 GAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAAT 20511 ||||| || |||||| | |||| |||| | || | || | || |||||| Sbjct 374724 AAATTGAGTTGCATGATGTATTAGAGATCATGTGATTTTGGTTTAGGAATACCATTCAAT 374783 Query 20512 ATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATG-TTACAGATTTAAAAACGGG 20570 ||||| |||||||| | | || |||||| ||||| | | | || |||| || || Sbjct 374784 ATTGCTAGTTATGCCTTATTAACATATATGCTTGCAAAGGAATGCA-ATTTGAATTTAGG 374842 Query 20571 TGACTTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAA 20630 || || | || |||| || | |||||||| ||||||| |||| ||||||| Sbjct 374843 AGAATTTATTCATGTTTTAGGTGATACACATATTTATAGTAATCATGTAGATGCTTTAAA 374902 Query 20631 A 20631 | Sbjct 374903 A 374903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399181358275135