Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq75 385 5e-102 seq80 279 5e-70 >seq75 Length=370783 Score = 385 bits (426), Expect = 5e-102 Identities = 669/970 (69%), Gaps = 47/970 (5%) Strand=Plus/Plus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 || || | |||||| |||| ||||| ||||||||||||| || |||||| | |||| Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | | ||||| ||||| |||| | | | |||| ||||| | | |||| || || Sbjct 196237 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAATGCAAATATTAGTC 196296 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| |||| || |||||||||| |||||||| | ||||||| || |||| || | Sbjct 196297 TATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCGA 196356 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCG 14156 | || | | | ||| |||||||||||| || || || |||||| || Sbjct 196357 CTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATATAATT-TCA 196415 Query 14157 T-AATAATTTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAAT 14213 | ||| || |||| | ||||| || ||||| ||| | ||| ||||||| Sbjct 196416 TGAATTCGTTGATTACTC--AATTTATTTACTAAGTGTTTGTAAAGAAGACAAGCAAAAT 196473 Query 14214 CACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCA 14273 || |||||| || |||||||| ||| | ||| ||||||||||||| ||||||||||| Sbjct 196474 CAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGCATCA 196533 Query 14274 ATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAA 14333 || || ||||||| ||| ||||||||| ||||| || |||||||| || || |||| Sbjct 196534 ATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCTTCAA 196593 Query 14334 CTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTC 14393 |||||||||| || ||||||| ||| |||| || | |||| ||| ||||||||| Sbjct 196594 CTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTT---TATCCATTTCA 196650 Query 14394 TAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTT 14453 ||||||| | ||| |||| |||| | || | |||||||||| || | | | Sbjct 196651 TAGCCCACATTGCTTTCTTTTATATAACAGGCACATTATCAATAGCATGAAGAAGGTAAT 196710 Query 14454 CCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAGT 14510 || || || | | ||| || |||||||| |||| || || |||| |||| Sbjct 196711 TTTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAG---TAAGTTTCTGAGT 196767 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCT 14570 | || |||||||| ||||| | ||| |||||||||||||| ||||||| ||| || | Sbjct 196768 GAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAACTT 196827 Query 14571 CTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 | | | ||| || |||||||||||||| || || |||||||| |||||||| || | Sbjct 196828 CAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGAAAG 196887 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTG--AGTTTTTTCCAATCGGCTAA 14688 | | | | || ||||||| || || || ||||| ||||||| |||||| ||| Sbjct 196888 CAAGCACATACTTTATAAAGTGTTTTTCATC--TGCTGTTAGTTTTTCCCAATCTTTTAA 196945 Query 14689 ATCCT------------------TAGAA----------AGATCTACTTCATCAACTGTCC 14720 ||||| || || | ||||| || ||| |||||| Sbjct 196946 ATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAGCTGTCC 197005 Query 14721 AAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAA 14780 ||||||| || | || ||||||||| ||| || || |||||| ||||||||| | Sbjct 197006 AAAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAGGAAACA 197065 Query 14781 CTACAAATCT 14790 ||||||||| Sbjct 197066 ATACAAATCT 197075 >seq80 Length=351589 Score = 279 bits (308), Expect = 5e-70 Identities = 575/838 (69%), Gaps = 27/838 (3%) Strand=Plus/Minus Query 13857 AAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13916 |||||||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 13917 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13976 ||| || | |||||| |||| ||||| || |||||||||| | ||||| | |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 13977 TAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 | | ||||| ||||| |||| | | | |||| |||| |||| ||||| Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 |||| |||| || || ||||||| |||||||| | ||||||| || |||| || | Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126 Query 14097 CAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 14155 | || | | || ||| |||||||||||| || ||||| | | | |||||| Sbjct 175125 CTGGTAA-AGCTTCACTAATAAATTCTTTTTCAATTTCAACAGCT--GATGA-AATAATT 175070 Query 14156 GTAATAATTTCATTAG--AAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAA 14211 |||| | ||| || | | |||| | | ||||||| | | | ||| ||||| Sbjct 175069 -TAATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAA 175011 Query 14212 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 14271 |||| ||||| || |||||||| |||||||| |||||||| || | ||| ||||| Sbjct 175010 ATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCAT 174951 Query 14272 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 14331 ||| || |||||| | |||||| || ||| ||||| || |||||||| || || || Sbjct 174950 TAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTC 174891 Query 14332 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14391 ||| |||||||| || ||||||| ||| |||| || | || | || ||||| || Sbjct 174890 AACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATTA---ATCCACTT 174834 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATC--CATTGTTTCAATAGCAT-TA-AATA 14447 | ||||| | |||||||| |||| | |||||| ||||||||| || || | Sbjct 174833 CATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTGT--CAATAGCATGTAGAAGA 174776 Query 14448 AATGTTCCTTCTCTTTAGT-ACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCA 14506 | || ||| ||| | | || ||||| || ||||| | | ||| |||| Sbjct 174775 TAATTTTTTTCATTTTCATCAGTT---ATGTAAGTGTCAATCAAAAGAGAATAAGTTTCT 174719 Query 14507 GAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT 14566 || ||||| || ||||||||||| | || |||||||||||||| ||||||| ||| Sbjct 174718 GAATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGA 174659 Query 14567 ACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAA 14626 || || | ||||| | || | |||||||| || ||||||||||| |||||||| Sbjct 174658 ACTTCAGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAG 174599 Query 14627 AATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGC--TGAGTTTTTTCCAATC 14682 || || | | | || ||||| | || || || ||| |||| |||| |||||| Sbjct 174598 AAAGCAAGGACATACTTTATAAAATGTTTTTCGTC--TGCAGTGAGCTTTTCCCAATC 174543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482342326079240