Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq75 147 2e-30 seq56 86.0 6e-12 seq25 84.2 2e-11 seq28 82.4 7e-11 >seq75 Length=370783 Score = 147 bits (162), Expect = 2e-30 Identities = 637/1007 (63%), Gaps = 49/1007 (5%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 || ||||| |||||| || | ||||| ||||||||| ||||||| || ||||| Sbjct 197105 GAAGAACCTCTTTTGAAACAAAATCCAAATAGATTTGTATTGTTTCCTATAAAATATAAT 197046 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || |||||||| ||||| ||| | ||||| |||||||| | ||||| |||| Sbjct 197045 GATATTTGGAATATGTATAAATAACATAAAGCAAGTTTTTGGACAGCTGAAGAGATAGAT 196986 Query 57627 CTGTCTAAGG----------------------------ATCTGAGCGATTGGGATTCCCT 57658 ||| | ||| || | | |||||||| || Sbjct 196985 TTGTATTAGGTATTATATGTAAATTAATAAATTTTAGGATTTAAAAGATTGGGAAAAACT 196926 Query 57659 CAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGG 57718 | || | ||| | | | ||||| || | ||| | || || || || ||| ||||| Sbjct 196925 AACAGCAGATGAAAAACACTTTATAAAGTATGTGCTTGCTTTCTTTGCAGCAAGTGATGG 196866 Query 57719 TATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAG 57778 ||||| || || ||||||| || ||| | ||||| ||||| | || || || Sbjct 196865 CATTGTGAATGAAAATTTGGCTTAATAATTCTGTACTGAAGTTCAAGTTCCAGAAGCAAG 196806 Query 57779 ATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACT 57838 ||| ||||| |||||| || | || || ||||| | || ||||||| || || || | Sbjct 196805 ATGTTTTTATGGATTTTAAATAGCAATGGAAAATATTCACTCAGAAACTTACTCACTTTT 196746 Query 57839 CATCGATACGTACGTGA---AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGA 57895 || ||||| || | | | || || || | ||| || | |||| || || || Sbjct 196745 AATTGATACTTATATTACTGATGAAAATGA--AAAAAATTACCTTCTTCAT-GCTATTGA 196689 Query 57896 AACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCAC 57955 | |||| | || ||||| ||| |||| | || ||||||||||| | | Sbjct 196688 TAATGTGCCTGTTATATAAAAGAAAGCAATGTGGGCTATGAAATGGATAAA---CTAAAA 196632 Query 57956 GGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGG 58015 | | | || || || || |||| || || || || || |||||||| |||||||| || Sbjct 196631 TGACTCATTTGCTGAAAGATTAATTGCTTTTGCTGCAGTTGAAGGTATTTTCTTTTCTGG 196572 Query 58016 CAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAG 58075 ||| |||||||| ||||| || || | ||||||| || || || ||| Sbjct 196571 TTCATTTTGTGCAATATTCTGGATAAAAAAGAGATCATTGATGCCAGGACTAACATTTTC 196512 Query 58076 CAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTC 58135 || || || || || | || || ||||| |||||||||||||| || || | ||| Sbjct 196511 AAATGAATTAATTTCAAGAGATGAAGGTCTTCATACTGATTTTGCTTGTCTTCTTTACAA 196452 Query 58136 TCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGC 58195 ||| | || |||||| || | || || || ||||| | || || | Sbjct 196451 ACACTTAGTAAATAAATTGAGTAATCAACGAATTCATGAAATTATATCATCCGCAGTTGA 196392 Query 58196 GATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGA 58255 || ||||| || ||| | | |||||| |||| || | | | || ||||| | | Sbjct 196391 AATTGAAAAAGAATTTATAAGCGAAGCTTTACCAGTCGAATTAATTGGAATGAATTCTAA 196332 Query 58256 TTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGA 58315 ||| ||| | | || ||||| |||||||| || ||||| | | | | | || | Sbjct 196331 TTTAATGAAATAATATATTGAATTTGTTGCAGATAGACTAATATTTGCA---TTAGGTGC 196275 Query 58316 GCGTCA---TTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 | | | ||||| | || ||||| ||||| | ||| || |||| || | | || Sbjct 196274 ACCTAAAATATACAATTCAAAGAATCCTTTTGAATGGATGGATATGATATCATTGTAAGG 196215 Query 58373 CAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCGG 58432 || || || || ||||||| || ||| | || || ||||| || || |||| | Sbjct 196214 TAAAACTAATTTCTTCGAAAGAAGAGTAGGAGATTACTAAAAAGCTGGAGTAATGA---G 196158 Query 58433 TAACAAGTTGGAGGACGATATTTTCACTTTGGATGCTGCCTTTTAAT 58479 ||| || | || | | ||||| ||| ||||||||| |||| || Sbjct 196157 TAAAAAATAAGATAAAG-TATTT--ACTATGGATGCTGATTTTTGAT 196114 >seq56 Length=425007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 31186 ATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA 31245 || ||| ||| |||||||||| || || || ||||| || || ||||| |||| ||||| Sbjct 240080 ATAAAAAATGTAAATTTTCGTTAAAACACTCACAGGAAAGACAATCACTCTCGATGTTGA 240139 Query 31246 ACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCC 31305 ||| || |||| | || | |||||| | ||| || |||||||| | || || Sbjct 240140 ACCATCAGACACAATTGACGCTGTCAAAGCTAAAATTTAAGATAAGGAAGGAATCCCACC 240199 Query 31306 CGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAG 31362 || | | | || || || || || || | || ||||| | | || || | || Sbjct 240200 TGATTAATAAAGACTCATTTTTGCAGGAAAGTAATTAGAAGA-TGGAAGAACACTTTCAG 240258 Query 31363 CGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 | |||||||||||||||||||| |||||||| | || | ||| |||| || || Sbjct 240259 --ACTATAACATTCAAAAAGAATCAACTCTTCACTTAGTTTTGAGATTGAGAGGTGG 240313 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/231 (69%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||| |||||||||| ||||| |||| || ||||| ||||| | ||||| ||||| || Sbjct 240771 ATGTAAATTTTCGTTAAGACATTGACTGGAAAAACAATCACTCTTGACGTCGAACCATCA 240830 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| ||||||||||| | || || || | Sbjct 240831 GACACAATTGATGCTGTCAAAGCTAAAATTTAAGACAAGGAAGGAATCCCACCTGATTAA 240890 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG---ACTATGAGCGATTAT 31369 | | || || ||||| || || | || ||||| | | | ||| | | || ||| Sbjct 240891 TAAAGACTCATTTTCGCAGGAAAGTAATTAGAAGA-TGGAAGAACACTTTCA--GACTAT 240947 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| |||||||||| || ||||| | || | ||| | || |||||| Sbjct 240948 AACATTTAAAAAGAATCAACACTTCACTTAGTCTTAAGATTAAGAGGCGGT 240998 >seq25 Length=585425 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||| ||||||| || || || || |||||||| || ||||| | || ||||| || Sbjct 449891 AATATGTAAATTTTTGTTAAAACCCTCACAGGCAAGACCATCACTCTTGATGTTGAGCCA 449950 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || || ||| | | |||||||||| | || || || Sbjct 449951 TCTGACACCATCGATGCTGTTAAGGCAAAGATTTAAG-ACAAGGAAGGAATCCCTCCTGA 450009 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA---CTATGAGCGA 31365 | | | |||| || ||||| || || |||||||| | | || || | || | Sbjct 450010 TTAATAAAGATTAATTTTTGCTGGAAAGCAATTGGAAGA-TGGAAGAACACTTTCAG--A 450066 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||||||| |||||||||| ||||| ||| | || | ||||| || || ||| Sbjct 450067 TTATAACATCTAAAAAGAATCAACTCTCCATTTAGTTTTGAGACTTAGAGGAGGT 450121 >seq28 Length=561789 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||| ||||||| || ||||| || ||||| || || ||||| | || ||||| || Sbjct 91000 AATATGTAAATTTTTGTTAAGACCCTTACAGGGAAGACCATCACACTTGATGTTGAGCCA 90941 Query 31250 TCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || || | | |||| | || || || ||| | | |||| ||||| | || || || Sbjct 90940 TCTGATACTATCGATGCTGTTAAGGCAAAGATTTAAG-ACAAAGAAGGAATCCCACCTGA 90882 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 | | | | || || ||||| || || |||||||| | ||| | ||||| Sbjct 90881 TTAATAAAGATTGATTTTTGCTGGAAAGCAATTGGAAGATGGAAGAACTCTTTCAGATTA 90822 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 |||||| |||||||||| ||||| ||| | ||| | ||||| || || ||| Sbjct 90821 TAACATCTAAAAAGAATCAACTCTCCATTTAGTATTGAGACTCAGAGGAGGT 90770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445763374360560