Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq59 111 3e-19 seq75 100 6e-16 >seq59 Length=418960 Score = 111 bits (122), Expect = 3e-19 Identities = 362/559 (65%), Gaps = 5/559 (1%) Strand=Plus/Plus Query 35137 AGGAGTGAAGAAGGACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCCAAAT 35196 |||||| | ||||| |||||||||||| ||||| |||| || |||||| || Sbjct 374234 AGGAGTATATAAGGATGATAGAACTGGAGTGGGAACAATATCAATATTTGGATAAACCAT 374293 Query 35197 GAGGTTCTCTCTTCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAG 35256 ||| || | | ||| || |||| | | || || || ||| | |||| | Sbjct 374294 GAGATTTAATTTGGCAGAAT---CTTTTCCTTTATTAACAACAAAAAAAGTATTCTTTCG 374350 Query 35257 AGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGC 35316 |||||||| || || | | |||||| | | ||||||||||||| ||| |||| Sbjct 374351 TGGAGTTGTAGAGGAGTTATTGTGGTTTTTAAAAGGCAATACAGACGGAAAATAATTATT 374410 Query 35317 CAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGG 35376 | |||||||| | || ||| | | ||||| | | || | |||| | |||| || Sbjct 374411 GGATAAGAAGATTAAGATATGGGAAGGAAATGGAACAAGAGACTATTTGAATAGTATTGG 374470 Query 35377 GTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTT 35436 ||| | || ||| ||| ||||||||||| ||||| ||||| ||||| | ||||| Sbjct 374471 ATTAAAAGAGAGATAGGAGCATGATTTGGGACCAGTATATGGATTTTAATGGAGACATTT 374530 Query 35437 TGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGC 35496 |||||| ||||| | |||| ||||||| | | || | ||| || | Sbjct 374531 TGGTGCCAAATATAAGGATTGTTAAAGTGATTATAATAATTAAGGAGTGGATTAAGTAAA 374590 Query 35497 CAAT-ATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCAT 35555 || || | || | || | | | |||||| || |||||| || || || |||| | Sbjct 374591 AGATGTTATTTAATA-ACTTAAAAATAATCCAAATAGTAGAAGAATTATATTGTCGGCTT 374649 Query 35556 GGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTT 35615 ||||||||| ||| | | ||||| | || || || || | | | |||||| Sbjct 374650 GGAATCCTAGCGATTTAAAATAGATGGCATTGCCACCTTGTCATGTAATGTCGTAATTTT 374709 Query 35616 ATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGG 35675 ||| || ||||| ||||| ||| | ||||| || || | ||| | || || | Sbjct 374710 TTGTAGCAAATGGTAAATTGAGTTGCATGATGTATTAGAGATCATGTGATTTTGGTTTAG 374769 Query 35676 GCGTGCCCTTCAATATTGC 35694 | | || ||||||||||| Sbjct 374770 GAATACCATTCAATATTGC 374788 >seq75 Length=370783 Score = 100 bits (110), Expect = 6e-16 Identities = 247/373 (66%), Gaps = 9/373 (2%) Strand=Plus/Minus Query 101869 GTGGGCTATTAATTGGATGCAAAGCAATAACGATTTGGCGGAACTAATTGTTGCCTTTGC 101928 ||||||||| || ||||| | ||| || || || ||| | | |||| ||||| Sbjct 196658 GTGGGCTATGAAATGGATAAACTAAAATGACTCATTTGCTGAAAGATTAATTGCTTTTGC 196599 Query 101929 TGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAG 101988 |||||||||||| || |||||| |||| |||| | || |||||||| || || || Sbjct 196598 TGCAGTTGAAGGTATTTTCTTTTCTGGTTCATTTTGTGCAATATTCTGGATAAAAAAGAG 196539 Query 101989 GGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCA 102048 | |||| || || || | || ||||| || ||||| || || ||||||||||| Sbjct 196538 ATCATTGATGCCAGGACTAACATTTTCAAATGAATTAATTTCAAGAGATGAAGGTCTTCA 196479 Query 102049 TCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAG---AGA 102105 | || ||||| || | || | ||| | || || ||| || || | Sbjct 196478 TACTGATTTTGCTTGTCTTCTTTACAAACA---CTTAGTAAATA---AATTGAGTAATCA 196425 Query 102106 AAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTC 102165 | | |||| ||||||| | | || || ||||||| |||||||| | | | | Sbjct 196424 ACGAATTCATGAAATTATATCATCCGCAGTTGAAATTGAAAAAGAATTTATAAGCGAAGC 196365 Query 102166 CCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGT 102225 | || || ||||| | |||||||| | || || |||| | || ||||||||||| Sbjct 196364 TTTACCAGTCGAATTAATTGGAATGAATTCTAATTTAATGAAATAATATATTGAATTTGT 196305 Query 102226 GGCAGATAAACTA 102238 ||||||| |||| Sbjct 196304 TGCAGATAGACTA 196292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989577115278565