Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq37 89.7 5e-13
seq56 86.0 6e-12
seq23 84.2 2e-11
>seq37
Length=526299
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | || || || ||| | || || | || | ||| || ||
Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || ||
Sbjct 191338 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||| || || || |||||||| |||||||||||
Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | || || || ||| | || || | || | ||| || ||
Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || ||
Sbjct 195031 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||| || || || |||||||| |||||||||||
Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925
Score = 89.7 bits (98), Expect = 5e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAA 197408
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | || || || ||| | || || | || | ||| || ||
Sbjct 197407 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 197348
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || ||
Sbjct 197347 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||| || || || |||||||| |||||||||||
Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 195380 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 195321
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| || ||||| | || || || ||| | || || | || | ||| || ||
Sbjct 195320 AAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 195261
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || |
Sbjct 195260 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAA 195202
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||| || | ||||| || ||||| || || || || |||| |||
Sbjct 195201 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAAATTTACAT 195153
>seq56
Length=425007
Score = 86.0 bits (94), Expect = 6e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 54351 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 54410
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| || ||||| | | || || ||| | || || | || | ||| || ||
Sbjct 54411 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 54470
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || |
Sbjct 54471 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 54529
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||| || | ||||| || ||||| || || |||||||||| |||
Sbjct 54530 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAATATTTACAT 54578
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596
||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 56069 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 56010
Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| ||| || ||||| | | || || ||| | || || | || | ||| || ||
Sbjct 56009 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 55950
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || |
Sbjct 55949 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 55891
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
| |||| || | ||||| || ||||| || || ||||| |||| |||
Sbjct 55890 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAAAATTTACAT 55842
Score = 82.4 bits (90), Expect = 8e-11
Identities = 157/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| || | |||||||||||| | || || ||||||| ||||||||| ||
Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 127645
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || ||||| | | || || ||| | || || | || | ||| || ||
Sbjct 127646 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 127705
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| | | |||| | ||| | | || | |||||| | || || ||
Sbjct 127706 ATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| || | ||||| || || || |||||||| ||||||| ||||
Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 127813
>seq23
Length=588601
Score = 84.2 bits (92), Expect = 2e-11
Identities = 161/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Minus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| |||| ||| | |||||||||||| | || || || |||| |||||||| ||
Sbjct 76903 CCACCTCTTAATCTCAAAACTAAGTGGAGTGTTGATTCCTTTTAGATGTTATAGTCTGAA 76844
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| ||| || |||||| | | ||| || ||| |||| || | || | |||||| ||
Sbjct 76843 AGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGG 76784
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCAC 139716
|| ||||| ||||| || |||| | |||| | | || | || || | || || ||
Sbjct 76783 ATTCCTTCCTTGTCTTAGA-TTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAAC 76725
Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTAT 139771
|||| || | ||||| || || | ||||| || || |||| ||||| ||||
Sbjct 76724 ATCAAGAGTAATTGTCTTTCCTGTGAGTGTTTTAACAAAGATTTACATAGGTTAT 76670
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496060632965600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |