Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq37 89.7 5e-13 seq56 86.0 6e-12 seq23 84.2 2e-11 >seq37 Length=526299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | |||||||||||| | || || ||||||| ||||||||| || Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || || Sbjct 191338 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || || |||||||| ||||||||||| Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | |||||||||||| | || || ||||||| ||||||||| || Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || || Sbjct 195031 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || || |||||||| ||||||||||| Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | |||||||||||| | || || ||||||| ||||||||| || Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAA 197408 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 197407 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 197348 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || || Sbjct 197347 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| || || || |||||||| ||||||||||| Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| || Sbjct 195380 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 195321 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 195320 AAGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 195261 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || | Sbjct 195260 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAA 195202 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || ||||| || || || || |||| ||| Sbjct 195201 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACAAAAATTTACAT 195153 >seq56 Length=425007 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| || Sbjct 54351 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 54410 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || ||||| | | || || ||| | || || | || | ||| || || Sbjct 54411 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 54470 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || | Sbjct 54471 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 54529 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || ||||| || || |||||||||| ||| Sbjct 54530 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAATATTTACAT 54578 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| ||| | |||||||||||| | || || ||||||| ||||||||| || Sbjct 56069 GCCACCTCTTAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 56010 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| || ||||| | | || || ||| | || || | || | ||| || || Sbjct 56009 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 55950 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCA 139715 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || | Sbjct 55949 GATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAA 55891 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||| || | ||||| || ||||| || || ||||| |||| ||| Sbjct 55890 CATCAAGAGTGATGGTCTTTCCAGTCAAGGTCTTAACGAAAATTTACAT 55842 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | |||||||||||| | || || ||||||| ||||||||| || Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 127645 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| | | || || ||| | || || | || | ||| || || Sbjct 127646 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 127705 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| | | |||| | ||| | | || | |||||| | || || || Sbjct 127706 ATTCCTTCCTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| || | ||||| || || || |||||||| ||||||| |||| Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 127813 >seq23 Length=588601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||| | |||||||||||| | || || || |||| |||||||| || Sbjct 76903 CCACCTCTTAATCTCAAAACTAAGTGGAGTGTTGATTCCTTTTAGATGTTATAGTCTGAA 76844 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || |||||| | | ||| || ||| |||| || | || | |||||| || Sbjct 76843 AGTGTTCTTCCGTCTTCTAATTATTTTCCTGCAAAGATAAGTCTTTATTAATCGGGTGGG 76784 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTG-TTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| || |||| | |||| | | || | || || | || || || Sbjct 76783 ATTCCTTCCTTGTCTTAGA-TTTTAGCTTTAACAGCATCAATAGTATCAGATGGTTCAAC 76725 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTAT 139771 |||| || | ||||| || || | ||||| || || |||| ||||| |||| Sbjct 76724 ATCAAGAGTAATTGTCTTTCCTGTGAGTGTTTTAACAAAGATTTACATAGGTTAT 76670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496060632965600