Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq75 387 1e-102 seq80 282 4e-71 >seq75 Length=370783 Score = 387 bits (428), Expect = 1e-102 Identities = 667/968 (69%), Gaps = 43/968 (4%) Strand=Plus/Plus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 || || | |||||| |||| ||||| ||||||||||||| || |||||| | |||| Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | | ||||| ||||| |||| | | | |||| ||||| | | |||| || || Sbjct 196237 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAATGCAAATATTAGTC 196296 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 |||| |||| ||| |||||||||| |||||||| | ||||||| || |||| || | Sbjct 196297 TATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCGA 196356 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG 13824 | || | | | ||| |||||||||||| || || || | |||||| Sbjct 196357 CTGGTAAAGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCGGATGATATAATTTCAT 196416 Query 13825 TAATAATCTCATTAGAAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAAATC 13882 ||| | |||| | ||||| || ||||| ||| | ||| |||||||| Sbjct 196417 GAATTCGTTGATTACTC--AATTTATTTACTAAGTGTTTGTAAAGAAGACAAGCAAAATC 196474 Query 13883 ACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAA 13942 | |||||| || |||||||| ||| | ||| ||||||||||||| |||||||||||| Sbjct 196475 AGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGCATCAA 196534 Query 13943 TCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAAC 14002 | || ||||||| ||| ||||||||| |||||| || |||||||| || || ||||| Sbjct 196535 TGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCTTCAAC 196594 Query 14003 TGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCT 14062 ||||||||| || ||||||| ||| |||| || | |||| ||| ||||||||| | Sbjct 196595 TGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTT---TATCCATTTCAT 196651 Query 14063 AGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTC 14122 |||||| | ||| |||| |||| | || | |||||||||| || | || | Sbjct 196652 AGCCCACATTGCTTTCTTTTATATAACAGGCACATTATCAATAGCATGAAGAAGGTAATT 196711 Query 14123 CTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAGAGTG 14179 || || || | | ||| || |||||||| |||| || || |||| ||||| Sbjct 196712 TTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAG---TAAGTTTCTGAGTG 196768 Query 14180 TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 || |||||||| ||||| | ||| |||||||| ||||| ||||| | ||| ||||| Sbjct 196769 AATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAACTTC 196828 Query 14240 CGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGC 14299 | | ||| || |||||||||||||| || || |||||||| |||||||| || || Sbjct 196829 AGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGAAAGC 196888 Query 14300 CAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGAGTTTTTTCCAATCGGATAAAT 14358 | | | || ||||||| || || || |||| ||||||| |||||| ||||| Sbjct 196889 AAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTT-AGTTTTTCCCAATCTTTTAAAT 196947 Query 14359 CCT------------------TAGAA----------AGATCTACTTCATCAACTGTCCAA 14390 ||| || || | ||||| || ||| |||||||| Sbjct 196948 CCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAGCTGTCCAA 197007 Query 14391 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14450 ||||| || | || ||||||||| ||| || || |||||| ||||||||| | | Sbjct 197008 AAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAGGAAACAAT 197067 Query 14451 ACAAATCT 14458 |||||||| Sbjct 197068 ACAAATCT 197075 >seq80 Length=351589 Score = 282 bits (312), Expect = 4e-71 Identities = 568/833 (68%), Gaps = 17/833 (2%) Strand=Plus/Minus Query 13525 AAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13584 |||||||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 13585 GATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13644 ||| || | |||||| |||| ||||| || |||||||||| | ||||| | |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 13645 TAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 | | ||||| ||||| |||| | | | |||| |||| |||| ||||| Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 |||| |||| ||| || ||||||| |||||||| | ||||||| || |||| || | Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126 Query 13765 CAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATT 13823 | || | | || ||| |||||||||||| || ||||| | | ||||||| Sbjct 175125 CTGGTAA-AGCTTCACTAATAAATTCTTTTTCAATTTCAACAGC---TGATGAAATAATT 175070 Query 13824 GTAATAATCTCATTAG--AAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAA 13879 |||| | || || | | |||| | | ||||||| | | | ||| ||||| Sbjct 175069 -TAATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAA 175011 Query 13880 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13939 |||| ||||| || |||||||| |||||||| |||||||| || | ||| ||||| Sbjct 175010 ATCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCAT 174951 Query 13940 CAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTC 13999 ||| || |||||| | |||||| || ||| |||||| || |||||||| || || || Sbjct 174950 TAATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTC 174891 Query 14000 AACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTT 14059 ||| |||||||| || ||||||| ||| |||| || | || | || ||||| || Sbjct 174890 AACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATTA---ATCCACTT 174834 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATC--CATTGTTTCAATAGCATTAAATAAA 14117 | ||||| | |||||||| |||| | |||||| ||||||||| | | | Sbjct 174833 CATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTGT--CAATAGCATGTAGAAGA 174776 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 || | || || || | | ||||| || ||||| | | ||| |||| || Sbjct 174775 TAATTTTTTTCATTTTCATCAGTTATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTGAA 174716 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACT 14237 ||||| || ||||||||||| | || |||||||| ||||| ||||| | ||| ||| Sbjct 174715 TGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAACT 174656 Query 14238 TCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14297 || | ||||| | || | |||||||| || ||||||||||| |||||||| || Sbjct 174655 TCAGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAAGAAA 174596 Query 14298 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14350 || | | | || ||||| | || || || |||| |||| |||||| Sbjct 174595 GCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479724743846200