Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq75 356 2e-93 seq80 266 3e-66 >seq75 Length=370783 Score = 356 bits (394), Expect = 2e-93 Identities = 668/972 (69%), Gaps = 51/972 (5%) Strand=Plus/Plus Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||||||| |||| | | ||| || ||||| | ||| ||| || || || ||||| Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 || || | |||||| |||| || || ||||||||||||| || |||||| | |||| Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | | || || ||||| |||| | | | |||| ||||| | | |||| || || Sbjct 196237 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAATGCAAATATTAGTC 196296 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 |||| |||| ||| |||||||||| |||||||| | ||||||| || |||| || | Sbjct 196297 TATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCGA 196356 Query 13553 CAGGAATTATATTAG-TTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611 | || | | || | ||| |||||||||||| || || || | | ||| |||| Sbjct 196357 CTGGTAA-AGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCG--GATGATA-TAATT 196412 Query 13612 TTAATAATGTCATTAG--AAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAA 13667 | | ||| || || | | ||||| || ||||| ||| | ||| ||||| Sbjct 196413 TCATGAAT-TCGTTGATTACTCAATTTATTTACTAAGTGTTTGTAAAGAAGACAAGCAAA 196471 Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727 |||| |||||| || |||||||| ||| | ||| ||||||||||||| ||||||||| Sbjct 196472 ATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGCAT 196531 Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787 |||| || ||||||| ||| ||||||||| ||||| || |||||||| || || || Sbjct 196532 CAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCTTC 196591 Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847 |||||||||||| || |||| || ||| |||| || | |||| ||| ||||||||| Sbjct 196592 AACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTT---TATCCATTT 196648 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA-AT 13906 ||||||| | ||| |||| |||| | || | || || ||| |||| || | Sbjct 196649 CATAGCCCACATTGCTTTCTTTTATATAACAGGCACATTATCAATAGCA-TGAAGAAGGT 196707 Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAG 13963 | || || || | | ||| || |||||||| |||| || || |||| | Sbjct 196708 AATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAG---TAAGTTTCTG 196764 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 |||| || ||||| || ||||| | ||| |||||||||||||| ||||||| ||| | Sbjct 196765 AGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAA 196824 Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083 | || | | ||| || ||||| |||||||| ||||| |||||||| |||||||| | Sbjct 196825 CTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGA 196884 Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGAGTTTTTTCCAATCGGCT 14142 | || | | | || ||||||| || || || |||| ||||||| |||||| | Sbjct 196885 AAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTT-AGTTTTTCCCAATCTTTT 196943 Query 14143 AAATCCT------------------TAGAA----------AGATCTACTTCATCAACTGT 14174 ||||||| || || | ||||| || ||| |||| Sbjct 196944 AAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAGCTGT 197003 Query 14175 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234 ||||||||| || | || ||||||||| ||| || || |||||| ||||||||| Sbjct 197004 CCAAAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAGGAAA 197063 Query 14235 AACTACAAATCT 14246 | ||||||||| Sbjct 197064 CAATACAAATCT 197075 >seq80 Length=351589 Score = 266 bits (294), Expect = 3e-66 Identities = 569/837 (68%), Gaps = 25/837 (3%) Strand=Plus/Minus Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372 |||||||| |||| | | ||| || ||||| | ||| ||| ||||| || ||||| Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306 Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432 ||| || | |||||| |||| || || || |||||||||| | ||||| | |||| Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246 Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 | | || || ||||| |||| | | | |||| |||| |||| ||||| Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 |||| |||| ||| || ||||||| |||||||| | ||||||| || |||| || | Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 | || | | | | | |||||||||||| || ||||| | | | |||||| | Sbjct 175125 CTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGC--TGATGA-AATAAT-T 175070 Query 13613 TAATAATGTCATT--AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 13668 |||| | || || | | |||| | | ||||||| | | | ||| |||||| Sbjct 175069 TAATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAAA 175010 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 ||| ||||| || |||||||| |||||||| |||||||| || | ||| ||||| Sbjct 175009 TCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATT 174950 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 ||| || |||||| | |||||| || ||| ||||| || |||||||| || || ||| Sbjct 174949 AATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCA 174890 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848 || |||||||| || |||| || ||| |||| || | || | || ||||| || Sbjct 174889 ACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATT---AATCCACTTC 174833 Query 13849 CTAGCCCATTCAGAtttttttttAATAAAA--TCCATTGTTTCGATTGCA--TTGAATA- 13903 | ||||| | |||||||| |||| | ||||| || || ||| | ||| | Sbjct 174832 ATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTG--TCAATAGCATGTAGAAGAT 174775 Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963 ||| || | | || | | || ||||| || ||||| | | ||| |||| | Sbjct 174774 AATTTTTTTCATTTTCATCAGTT---ATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTG 174718 Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023 | ||||| || || |||||||| | || |||||||||||||| ||||||| ||| | Sbjct 174717 AATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAA 174658 Query 14024 CCTCCGAGTAAAATCTTTCT--GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081 | || |||| || || || || | ||||||||| |||||||||||||| |||||||| Sbjct 174657 CTTC--AGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAA 174600 Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138 || || | | | || ||||| | || || || |||| |||| |||||| Sbjct 174599 GAAAGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478585551578520