Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25]
543 sequences; 68,016,588 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq75 356 2e-93
seq80 266 3e-66
>seq75
Length=370783
Score = 356 bits (394), Expect = 2e-93
Identities = 668/972 (69%), Gaps = 51/972 (5%)
Strand=Plus/Plus
Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372
|||||||| |||| | | ||| || ||||| | ||| ||| || || || |||||
Sbjct 196117 AAAAATCAGCATCCATAGTAAATACTTTATCTTATTTTTTACTCATTACTCCAGCTTTTT 196176
Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432
|| || | |||||| |||| || || ||||||||||||| || |||||| | ||||
Sbjct 196177 AGTAATCTCCTACTCTTCTTTCGAAGAAATTAGTTTTACCTTACAATGATATCATATCCA 196236
Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492
| | || || ||||| |||| | | | |||| ||||| | | |||| || ||
Sbjct 196237 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCACCTAATGCAAATATTAGTC 196296
Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552
|||| |||| ||| |||||||||| |||||||| | ||||||| || |||| || |
Sbjct 196297 TATCTGCAACAAATTCAATATATTATTTCATTAAATTAGAATTCATTCCAATTAATTCGA 196356
Query 13553 CAGGAATTATATTAG-TTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC 13611
| || | | || | ||| |||||||||||| || || || | | ||| ||||
Sbjct 196357 CTGGTAA-AGCTTCGCTTATAAATTCTTTTTCAATTTCAACTGCG--GATGATA-TAATT 196412
Query 13612 TTAATAATGTCATTAG--AAGGAGGATATTT--TAGATGTTTAAAAATTAAACACGCAAA 13667
| | ||| || || | | ||||| || ||||| ||| | ||| |||||
Sbjct 196413 TCATGAAT-TCGTTGATTACTCAATTTATTTACTAAGTGTTTGTAAAGAAGACAAGCAAA 196471
Query 13668 ATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCAT 13727
|||| |||||| || |||||||| ||| | ||| ||||||||||||| |||||||||
Sbjct 196472 ATCAGTATGAAGACCTTCATCTCTTGAAATTAATTCATTTGAAAATGTTAGTCCTGGCAT 196531
Query 13728 CAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTC 13787
|||| || ||||||| ||| ||||||||| ||||| || |||||||| || || ||
Sbjct 196532 CAATGATCTCTTTTTTATCCAGAATATTGCACAAAATGAACCAGAAAAGAAAATACCTTC 196591
Query 13788 AACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTT 13847
|||||||||||| || |||| || ||| |||| || | |||| ||| |||||||||
Sbjct 196592 AACTGCAGCAAAAGCAATTAATCTTTCAGCAAATGAGTCATTTTAGTT---TATCCATTT 196648
Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAA-AT 13906
||||||| | ||| |||| |||| | || | || || ||| |||| || |
Sbjct 196649 CATAGCCCACATTGCTTTCTTTTATATAACAGGCACATTATCAATAGCA-TGAAGAAGGT 196707
Query 13907 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT---AAGTAAGCTATACATTTCAG 13963
| || || || | | ||| || |||||||| |||| || || |||| |
Sbjct 196708 AATTTTTTTCATTTTCATCAGTAATATAAGTATCAATTAAAAGTGAG---TAAGTTTCTG 196764
Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023
|||| || ||||| || ||||| | ||| |||||||||||||| ||||||| ||| |
Sbjct 196765 AGTGAATATTTTCCATTGCTATTTAAAATCCATAAAAACATCTTGCTTCTGGAACTTGAA 196824
Query 14024 CCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAA 14083
| || | | ||| || ||||| |||||||| ||||| |||||||| |||||||| |
Sbjct 196825 CTTCAGTACAGAATTATTAAGCCAAATTTTCATTCACAATGCCATCACTTGCTGCAAAGA 196884
Query 14084 ATGCCAATATGTTTTTAATAAAGTATTGCTCTTC-ATTGTTGAGTTTTTTCCAATCGGCT 14142
| || | | | || ||||||| || || || |||| ||||||| |||||| |
Sbjct 196885 AAGCAAGCACATACTTTATAAAGTGTTTTTCATCTGCTGTT-AGTTTTTCCCAATCTTTT 196943
Query 14143 AAATCCT------------------TAGAA----------AGATCTACTTCATCAACTGT 14174
||||||| || || | ||||| || ||| ||||
Sbjct 196944 AAATCCTAAAATTTATTAATTTACATATAATACCTAATACAAATCTATCTCTTCAGCTGT 197003
Query 14175 CCAAAAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAA 14234
||||||||| || | || ||||||||| ||| || || |||||| |||||||||
Sbjct 197004 CCAAAAACTTGCTTTATGTTATTTATACATATTCCAAATATCATTATATTTTATAGGAAA 197063
Query 14235 AACTACAAATCT 14246
| |||||||||
Sbjct 197064 CAATACAAATCT 197075
>seq80
Length=351589
Score = 266 bits (294), Expect = 3e-66
Identities = 569/837 (68%), Gaps = 25/837 (3%)
Strand=Plus/Minus
Query 13313 aaaaaTCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTT 13372
|||||||| |||| | | ||| || ||||| | ||| ||| ||||| || |||||
Sbjct 175365 AAAAATCAGCATCCATAGTAAATACTTTATCTTGTTTTTTACTCATAACTCCAGCTTTTT 175306
Query 13373 GATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCA 13432
||| || | |||||| |||| || || || |||||||||| | ||||| | ||||
Sbjct 175305 AATAGTCTCCGACTCTTCTTTCGAAGAAATTTGTTTTACCTTATAAGGATATCATATCCA 175246
Query 13433 TAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATC 13492
| | || || ||||| |||| | | | |||| |||| |||| |||||
Sbjct 175245 TCCATTCAAAAGGATTCTTTGAATTGTATATTTTAGGTGCTCCTAAAGAAAATATTAATC 175186
Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552
|||| |||| ||| || ||||||| |||||||| | ||||||| || |||| || |
Sbjct 175185 TATCTGCAACAAATTCTATATATTATTTCATTAAATTAGAATTCATTCCGATTAATTCAA 175126
Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612
| || | | | | | |||||||||||| || ||||| | | | |||||| |
Sbjct 175125 CTGGTAAAGCTTCACTAATAAATTCTTTTTCAATTTCAACAGC--TGATGA-AATAAT-T 175070
Query 13613 TAATAATGTCATT--AGAAGGAGGATATT--TTAGATGTTTAAAAATTAAACACGCAAAA 13668
|||| | || || | | |||| | | ||||||| | | | ||| ||||||
Sbjct 175069 TAATGAATTCGTTGATTACTCAATTTATTAATCATATGTTTATATAGGAGACAAGCAAAA 175010
Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728
||| ||||| || |||||||| |||||||| |||||||| || | ||| |||||
Sbjct 175009 TCAGTGTGAAGTCCTTCATCTCTTGATATAAGTTCATTTGAAAAGGTAAGTCCAGGCATT 174950
Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788
||| || |||||| | |||||| || ||| ||||| || |||||||| || || |||
Sbjct 174949 AATGATCTTTTTTTGATCCAAAAAATGGCACAAAATGAACCAGAAAAGAAGATGCCTTCA 174890
Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTT 13848
|| |||||||| || |||| || ||| |||| || | || | || ||||| ||
Sbjct 174889 ACAGCAGCAAAAGCGATTAATCTTTCAGCAAATGAATCATTCTAATT---AATCCACTTC 174833
Query 13849 CTAGCCCATTCAGAtttttttttAATAAAA--TCCATTGTTTCGATTGCA--TTGAATA- 13903
| ||||| | |||||||| |||| | ||||| || || ||| | ||| |
Sbjct 174832 ATTGCCCACATTGCTTTTTTTTGTATAACAGGAACATTG--TCAATAGCATGTAGAAGAT 174775
Query 13904 AATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAG 13963
||| || | | || | | || ||||| || ||||| | | ||| |||| |
Sbjct 174774 AATTTTTTTCATTTTCATCAGTT---ATGTAAGTGTCAATCAAAAGAGAATAAGTTTCTG 174718
Query 13964 AGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTA 14023
| ||||| || || |||||||| | || |||||||||||||| ||||||| ||| |
Sbjct 174717 AATGTATATTCTCCATAGCTATTTAGAATCCATAAAAACATCTGGCTTCTGGAATTTGAA 174658
Query 14024 CCTCCGAGTAAAATCTTTCT--GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAA 14081
| || |||| || || || || | ||||||||| |||||||||||||| ||||||||
Sbjct 174657 CTTC--AGTACAAAATTACTAAGCTAGGTTTTCATTTACAATACCATCACTTGCTGCAAA 174600
Query 14082 AAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATC 14138
|| || | | | || ||||| | || || || |||| |||| ||||||
Sbjct 174599 GAAAGCAAGGACATACTTTATAAAATGTTTTTCGTCTGCAGTGAGCTTTTCCCAATC 174543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478585551578520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |