Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Paramecium_20sexaurelia_20[genbank_20GCA_5F000733375.1_202014-07-25] 543 sequences; 68,016,588 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq37 98.7 1e-15 seq21 95.1 1e-14 seq56 91.5 1e-13 seq25 91.5 1e-13 seq143 86.0 6e-12 >seq37 Length=526299 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 191458 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 191399 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 191398 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 191339 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 191338 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 191280 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 191279 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 191232 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 195151 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 195092 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 195091 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 195032 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 195031 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 194973 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 194972 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 194925 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 197467 CCACCTCTCAATCTCAAAACTAAGTGGAGGGTTGATTCTTTTTAAATGTTATAGTCTGAA 197408 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| || || ||| | || || | || | ||| || || Sbjct 197407 AGTGTTCTTCCATCTTCTAATTGCTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 197348 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 197347 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCGATTGTGTCTGATGGTTCAAC 197289 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||||||| Sbjct 197288 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTGCAT 197241 >seq21 Length=592296 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||||||||| | || |||||||||| || |||||||| Sbjct 450419 CCACCTCTTAATCTCAAAACTAAATGTAAGGTTGATTCTTTTTAAATATTGTAATCTGAA 450360 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| |||||||| || ||| | |||| | || | ||| || || Sbjct 450359 AGAGTTCTTCCATCTTCTAGTTGTTTTCCTGCAAAAATCAATCTTTATTAATCAGGTGGG 450300 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| || || ||| | || | |||| | | || | ||||| | || ||||| Sbjct 450299 ATTCCTTCCTTATC-TTAAATCTTAGCTTTAACAGCGTCAATGGTGTCTGATGGCTCTAC 450241 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || |||| ||||| || || |||| |||| Sbjct 450240 ATCAAGAGTGATGGTCTTTCCCGTCAGGGTTTTAACAAAAATTTACATA 450192 >seq56 Length=425007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 127586 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 127645 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 127646 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 127705 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 127706 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAAC 127764 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 127765 ATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 127813 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 54808 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 54867 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 54868 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 54927 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 54928 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 54986 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 54987 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||||||||| || | || |||||||||| ||||| || || Sbjct 55840 CCACCTCTCAATCTCAAAACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGAA 55781 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 55780 AGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGGG 55721 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| || Sbjct 55720 ATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCAGATGGTTCAAC 55662 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| || || ||||||||||| ||||||| ||| Sbjct 55661 ATCAAGAGTGATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACAT 55614 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || | ||| ||||| || | || |||||||||| ||||| || || Sbjct 117015 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 116956 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 116955 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 116896 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTA 143135 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| | Sbjct 116895 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 116837 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 116836 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 116787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| || | ||| ||||| || | || |||||||||| ||||| || || Sbjct 131140 GCCACCTCTCAATCTCAAGACTAAGTGGAGAGTTGATTCTTTTTAAATGTTATAGTCTGA 131081 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| || ||||| | || || || ||| | || || | || | ||| || || Sbjct 131080 AAGTGTTCTTCCATCTTCTAATTACTTTCCTGCAAAAATGAGTCTTTATTAATCAGGTGG 131021 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTA 143135 || ||||| ||||| ||| |||| | ||| | | || | ||||| | ||||| | Sbjct 131020 GATTCCTTCCTTGTCT-TAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGTTCAA 130962 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | |||| ||| | ||||| || || ||||||||||| ||||||| |||| Sbjct 130961 CATCAAGAGTAATAGTCTTTCCAGTTAATGTTTTTACAAATATTTACATA 130912 >seq25 Length=585425 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | | |||||||||||| | || |||||||||| ||||| ||||| Sbjct 450120 CCTCCTCTAAGTCTCAAAACTAAATGGAGAGTTGATTCTTTTTAGATGTTATAATCTGAA 450061 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | ||| || |||||| | || | | || | ||| ||||| Sbjct 450060 AGTGTTCTTCCATCTTCCAATTGCTTTCCAGCAAAAATTAATCTTTATTAATCAGGAGGG 450001 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| ||| | |||| ||| | | || | ||||| | || || || Sbjct 450000 ATTCCTTCCTTGTC-TTAAATCTTTGCCTTAACAGCATCGATGGTGTCAGATGGCTCAAC 449942 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| ||| | |||||||| || | ||||| || || |||| |||| Sbjct 449941 ATCAAGAGTGATGGTCTTGCCTGTGAGGGTTTTAACAAAAATTTACATA 449893 >seq143 Length=219650 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| || | ||||||||||||| || ||||| |||| || || || || Sbjct 171910 CCTCCTCTCAACCTTAAAACTAAATGAAGGGTTGATTCCTTTTAGATATTATAGTCTGAA 171851 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | || ||| || ||| | || || | || || ||| || ||| Sbjct 171850 AGAGTTCTTCCATCTTCTAATTATTTCCCTGCAAAAATAAGCCTTTACTAATCAGGTGGT 171791 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTG-TTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||||||||| ||| |||| | ||| | | || | ||||| | || || || Sbjct 171790 ATTCCTTCTTTGTC-TTAAATTTTAGCTTTGACAGCGTCAATTGTGTCTGATGGCTCGAC 171732 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATG 143192 |||| || | || || || || || || || || || ||||||||| |||||| Sbjct 171731 ATCAAGTGTGATTGTTTTTCCAGTTAAGGTCTTGACAAAAATTTGCATAACTTATG 171676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507010958639760